Evidence map›Paper›PMID 39333110›Full record

ArticleNature communications2024

Potent pollen gene regulation by DNA glycosylases in maize.

Yibing Zeng, Julian Somers, Harrison S Bell, Zuzana Vejlupkova, R Kelly Dawe, John E Fowler, Brad Nelms, Jonathan I Gent

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Yibing Zeng *Department of Genetics, University of Georgia, Athens, GA, USA.
Julian Somers *Department of Genetics, University of Georgia, Athens, GA, USA.
Harrison S BellDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA.
Zuzana VejlupkovaDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA.ORCID 0000-0001-8682-3558
R Kelly DaweDepartment of Genetics, University of Georgia, Athens, GA, USA.ORCID 0000-0003-3407-4553
John E FowlerDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA.
Brad NelmsDepartment of Plant Biology, University of Georgia, Athens, GA, USA. nelms@uga.edu.
Jonathan I GentDepartment of Plant Biology, University of Georgia, Athens, GA, USA. gent@uga.edu.ORCID 0000-0002-3584-7717

Funding

Developmental mechanisms that buffer mutational load in plantsR35GM151237 · NIGMS · UNIVERSITY OF GEORGIA · PI Bradlee Nelms · 2023 to 2026
$1.4M
National Science Foundation (NSF) 2218712NIGMS NIH HHS R35 GM151237
6 · The paper itself

Abstract

Although DNA methylation primarily represses TEs, it also represses select genes that are methylated in plant body tissues but demethylated by DNA glycosylases (DNGs) in endosperm or pollen. Either one of two DNGs, MATERNAL DEREPRESSION OF R1 (MDR1) or DNG102, is essential for pollen viability in maize. Using single-pollen mRNA sequencing on pollen-segregating mutations in both genes, we identify 58 candidate DNG target genes that account for 11.1% of the wild-type transcriptome but are silent or barely detectable in other tissues. They are unusual in their tendency to lack introns but even more so in their TE-like methylation (teM) in coding DNA. The majority have predicted functions in cell wall modification, and they likely support the rapid tip growth characteristic of pollen tubes. These results suggest a critical role for DNA methylation and demethylation in regulating maize genes with the potential for extremely high expression in pollen but constitutive silencing elsewhere.

Indexed as

DNA GlycosylasesDNA MethylationGene Expression Regulation, PlantPollenZea maysMutationPlant ProteinsPollen TubeDNA GlycosylasesPlant Proteins

Identifiers

PMID39333110
PMCPMC11436724

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.