Evidence map›Paper›PMID 39333061›Full record

ArticleNature communications2024

Specific activation of the integrated stress response uncovers regulation of central carbon metabolism and lipid droplet biogenesis.

Katherine Labbé, Lauren LeBon, Bryan King, Ngoc Vu, Emily H Stoops, Nina Ly, Austin E Y T Lefebvre, Phillip Seitzer, Swathi Krishnan, Jin-Mi Heo and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Katherine Labbé *Calico Life Sciences LLC, South San Francisco, CA, USA.
Lauren LeBon *Calico Life Sciences LLC, South San Francisco, CA, USA.ORCID 0000-0003-3205-1948
Bryan King *Calico Life Sciences LLC, South San Francisco, CA, USA.
Ngoc VuCalico Life Sciences LLC, South San Francisco, CA, USA.
Emily H StoopsCalico Life Sciences LLC, South San Francisco, CA, USA.ORCID 0000-0002-8620-1916
Nina LyCalico Life Sciences LLC, South San Francisco, CA, USA.
Austin E Y T LefebvreCalico Life Sciences LLC, South San Francisco, CA, USA.
Phillip SeitzerCalico Life Sciences LLC, South San Francisco, CA, USA.
Swathi KrishnanCalico Life Sciences LLC, South San Francisco, CA, USA.
Jin-Mi HeoCalico Life Sciences LLC, South San Francisco, CA, USA.
Bryson BennettCalico Life Sciences LLC, South San Francisco, CA, USA. bryson@calicolabs.com.ORCID 0009-0001-4640-1796
Carmela SidrauskiCalico Life Sciences LLC, South San Francisco, CA, USA. carmela@calicolabs.com.ORCID 0000-0002-4850-3112

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The integrated stress response (ISR) enables cells to cope with a variety of insults, but its specific contribution to downstream cellular outputs remains unclear. Using a synthetic tool, we selectively activate the ISR without co-activation of parallel pathways and define the resulting cellular state with multi-omics profiling. We identify time- and dose-dependent gene expression modules, with ATF4 driving only a small but sensitive subgroup that includes amino acid metabolic enzymes. This ATF4 response affects cellular bioenergetics, rerouting carbon utilization towards amino acid production and away from the tricarboxylic acid cycle and fatty acid synthesis. We also find an ATF4-independent reorganization of the lipidome that promotes DGAT-dependent triglyceride synthesis and accumulation of lipid droplets. While DGAT1 is the main driver of lipid droplet biogenesis, DGAT2 plays an essential role in buffering stress and maintaining cell survival. Together, we demonstrate the sufficiency of the ISR in promoting a previously unappreciated metabolic state.

Indexed as

Activating Transcription Factor 4CarbonLipid DropletsStress, PhysiologicalAmino AcidsCitric Acid CycleDiacylglycerol O-AcyltransferaseEnergy MetabolismFatty AcidsHumansLipid MetabolismTriglyceridesActivating Transcription Factor 4Amino AcidsATF4 protein, humanCarbonDiacylglycerol O-AcyltransferaseFatty AcidsTriglycerides

Identifiers

PMID39333061
PMCPMC11436933

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.