Evidence map›Paper›PMID 39329635›Full record

ArticleBioengineering (Basel, Switzerland)2024

Anoikis-Related Long Non-Coding RNA Signatures to Predict Prognosis and Immune Infiltration of Gastric Cancer.

Wen-Jun Meng, Jia-Min Guo, Li Huang, Yao-Yu Zhang, Yue-Ting Zhu, Lian-Sha Tang, Jia-Ling Wang, Hong-Shuai Li, Ji-Yan Liu

Abstract read
In one paragraph

Article in Bioengineering (Basel, Switzerland), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Wen-Jun MengDepartment of Biotherapy, Cancer Center, West China Hospital, Sichuan University, Chengdu 610041, China.ORCID 0000-0002-6780-8720
Jia-Min GuoDivision of Abdominal Tumor Multimodality Treatment, Cancer Center, West China Hospital, Sichuan University, Chengdu 610041, China.
Li HuangDepartment of Biotherapy, Cancer Center, West China Hospital, Sichuan University, Chengdu 610041, China.
Yao-Yu ZhangDepartment of Urology, The General Hospital of Western Theater Command, Chengdu 610083, China.
Yue-Ting ZhuDepartment of Biotherapy, Cancer Center, West China Hospital, Sichuan University, Chengdu 610041, China.
Lian-Sha TangDepartment of Biotherapy, Cancer Center, West China Hospital, Sichuan University, Chengdu 610041, China.
Jia-Ling WangDepartment of Biotherapy, Cancer Center, West China Hospital, Sichuan University, Chengdu 610041, China.
Hong-Shuai LiDepartment of Biotherapy, Cancer Center, West China Hospital, Sichuan University, Chengdu 610041, China.ORCID 0000-0003-4270-8907
Ji-Yan LiuDepartment of Biotherapy, Cancer Center, West China Hospital, Sichuan University, Chengdu 610041, China.

Funding

West China Hospital of Sichuan University ZYJC18022
6 · The paper itself

Abstract

Anoikis is a distinct type of programmed cell death and a unique mechanism for tumor progress. However, its exact function in gastric cancer (GC) remains unknown. This study aims to investigate the function of anoikis-related lncRNA (ar-lncRNA) in the prognosis of GC and its immunological infiltration. The ar-lncRNAs were derived from RNA sequencing data and associated clinical information obtained from The Cancer Genome Atlas. Pearson correlation analysis, differential screening, LASSO and Cox regression were utilized to identify the typical ar-lncRNAs with prognostic significance, and the corresponding risk model was constructed, respectively. Comprehensive methods were employed to assess the clinical characteristics of the prediction model, ensuring the accuracy of the prediction results. Further analysis was conducted on the relationship between immune microenvironment and risk features, and sensitivity predictions were made about anticancer medicines. A risk model was built according to seven selected ar-lncRNAs. The model was validated and the calibration plots were highly consistent in validating nomogram predictions. Further analyses revealed the great accuracy of the model and its ability to serve as a stand-alone GC prognostic factor. We subsequently disclosed that high-risk groups display significant enrichment in pathways related to tumors and the immune system. Additionally, in tumor immunoassays, notable variations in immune infiltrates and checkpoints were noted between different risk groups. This study proposes, for the first time, that prognostic signatures of ar-lncRNA can be established in GC. These signatures accurately predict the prognosis of GC and offer potential biomarkers, suggesting new avenues for basic research, prognosis prediction and personalized diagnosis and treatment of GC.

Indexed as

anoikisbioinformaticsgastric cancerimmune infiltrationlong non-coding RNAprognostic model

Identifiers

PMID39329635
PMCPMC11428253

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.