Evidence map›Paper›PMID 39329259›Full record

ArticleNucleic acids research2024

Testis-specific H2B.W1 disrupts nucleosome integrity by reducing DNA-histone interactions.

Dongbo Ding, Matthew Y H Pang, Mingxi Deng, Thi Thuy Nguyen, Yue Liu, Xulun Sun, Zhichun Xu, Yingyi Zhang, Yuanliang Zhai, Yan Yan and 1 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

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  12. Comparison of popular enrichment methods for untargeted in vitro metabolomics.Metabolomics : Official journal of the Metabolomic Society · 2025
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  19. International journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Dongbo DingDivision of Life Science, The Hong Kong University of Science and Technology, Clear Water Bay, NT, HKSAR, China.ORCID 0000-0003-3515-8679
Matthew Y H PangDivision of Life Science, The Hong Kong University of Science and Technology, Clear Water Bay, NT, HKSAR, China.ORCID 0000-0003-3758-6140
Mingxi DengDivision of Life Science, The Hong Kong University of Science and Technology, Clear Water Bay, NT, HKSAR, China.
Thi Thuy NguyenDivision of Life Science, The Hong Kong University of Science and Technology, Clear Water Bay, NT, HKSAR, China.
Yue LiuDivision of Life Science, The Hong Kong University of Science and Technology, Clear Water Bay, NT, HKSAR, China.
Xulun SunDivision of Life Science, The Hong Kong University of Science and Technology, Clear Water Bay, NT, HKSAR, China.
Zhichun XuSchool of Biological Sciences, The University of Hong Kong, Pokfulam, Hong Kong, HKSAR, China.
Yingyi ZhangBiological Cryo-EM Center, The Hong Kong University of Science and Technology, Clear Water Bay, NT, HKSAR, China.
Yuanliang ZhaiSchool of Biological Sciences, The University of Hong Kong, Pokfulam, Hong Kong, HKSAR, China.
Yan YanDivision of Life Science, The Hong Kong University of Science and Technology, Clear Water Bay, NT, HKSAR, China.ORCID 0000-0002-3677-5006
Toyotaka IshibashiDivision of Life Science, The Hong Kong University of Science and Technology, Clear Water Bay, NT, HKSAR, China.ORCID 0000-0001-8015-2319

Funding

Innovation and Technology Fund MHP/033/20National Science Foundation of China 32170548Research Grants Council of the Hong Kong SAR C7009-20GShenzhen Science and Technology Innovation Commission JCYJ20200109140201722
6 · The paper itself

Abstract

Multiple testis-specific histone variants are involved in the dynamic chromatin transitions during spermatogenesis. H2B.W1 (previously called H2BFWT) is an H2B variant specific to primate testis with hitherto unclear functions, although its single-nucleotide polymorphisms (SNPs) are closely associated with male non-obstructive infertility. Here, we found that H2B.W1 is only expressed in the mid-late spermatogonia stages, and H2B.W1 nucleosomes are defined by a more flexible structure originating from weakened interactions between histones and DNA. Furthermore, one of its SNPs, H2B.W1-H100R, which is associated with infertility, further destabilizes the nucleosomes and increases the nucleosome unwrapping rate by interfering with the R100 and H4 K91/R92 interaction. Our results suggest that destabilizing H2B.W1 containing nucleosomes might change the chromatin structure of spermatogonia, and that H2B.W1-H100R enhances the nucleosome-destabilizing effects, leading to infertility.

Indexed as

DNAHistonesNucleosomesPolymorphism, Single NucleotideTestisAdultChromatinHumansInfertility, MaleMaleSpermatogenesisSpermatogoniaChromatinDNAHistonesNucleosomes

Identifiers

PMID39329259
PMCPMC11514470

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.