Evidence map›Paper›PMID 39325826›Full record

ArticlePLoS pathogens2024

Structure-guided in vitro evolution of nanobodies targeting new viral variants.

Gang Ye, Fan Bu, Ruangang Pan, Alise Mendoza, Ge Yang, Benjamin Spiller, Brian E Wadzinski, Lanying Du, Stanley Perlman, Bin Liu and 1 more

Abstract read
In one paragraph

Article in PLoS pathogens, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Gang YeDepartment of Pharmacology, University of Minnesota Medical School, Minneapolis, Minnesota, United States of America.
Fan BuDepartment of Pharmacology, University of Minnesota Medical School, Minneapolis, Minnesota, United States of America.
Ruangang PanDepartment of Microbiology and Immunology, University of Iowa, Iowa City, Iowa, United States of America.
Alise MendozaDepartment of Pharmacology, University of Minnesota Medical School, Minneapolis, Minnesota, United States of America.
Ge YangHormel Institute, University of Minnesota, Austin, Minnesota, United States of America.
Benjamin SpillerDepartment of Pharmacology, Vanderbilt University School of Medicine, Nashville, Tennessee, United States of America.
Brian E WadzinskiDepartment of Pharmacology, Vanderbilt University School of Medicine, Nashville, Tennessee, United States of America.
Lanying DuInstitute for Biomedical Sciences, Georgia State University, Atlanta, Georgia, United States of America.
Stanley PerlmanDepartment of Microbiology and Immunology, University of Iowa, Iowa City, Iowa, United States of America.
Bin LiuHormel Institute, University of Minnesota, Austin, Minnesota, United States of America.
Fang LiDepartment of Pharmacology, University of Minnesota Medical School, Minneapolis, Minnesota, United States of America.ORCID 0000-0002-1958-366X

Funding

Project 5: Pandemic Virus Helicase InhibitorsU19AI171954 · NIAID · UNIVERSITY OF MINNESOTA · PI Donghoon Chung · 2022 to 2026
$100.9M
Receptor recognition mechanisms of coronavirusesR01AI089728 · NIAID · UNIVERSITY OF MINNESOTA · PI Fang Li, Timothy Patrick Sheahan · 2010 to 2026
$4.7M
Novel nanobodies to prevent and treat SARS-CoV-2 and other pathogenic human coronavirusesR01AI157975 · NIAID · NEW YORK BLOOD CENTER · PI DU, LANYING, LI, FANG · 2020 to 2025
$3.9M
NIAID NIH HHS R01 AI089728NIAID NIH HHS R01 AI157975NIAID NIH HHS U19 AI171954
6 · The paper itself

Abstract

A major challenge in antiviral antibody therapy is keeping up with the rapid evolution of viruses. Our research shows that nanobodies - single-domain antibodies derived from camelids - can be rapidly re-engineered to combat new viral strains through structure-guided in vitro evolution. Specifically, for viral mutations occurring at nanobody-binding sites, we introduce randomized amino acid sequences into nanobody residues near these mutations. We then select nanobody variants that effectively bind to the mutated viral target from a phage display library. As a proof of concept, we used this approach to adapt Nanosota-3, a nanobody originally identified to target the receptor-binding domain (RBD) of early Omicron subvariants, making it highly effective against recent Omicron subvariants. Remarkably, this adaptation process can be completed in less than two weeks, allowing drug development to keep pace with viral evolution and provide timely protection to humans.

Indexed as

SARS-CoV-2Single-Domain AntibodiesAnimalsAntibodies, ViralCOVID-19HumansMutationSpike Glycoprotein, CoronavirusAntibodies, ViralSingle-Domain AntibodiesSpike Glycoprotein, Coronavirus

Identifiers

PMID39325826
PMCPMC11460708

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.