Evidence map›Paper›PMID 39325717›Full record

ArticleThe Plant cell2024

The potato RNA metabolism machinery is targeted by the cyst nematode effector RHA1B for successful parasitism.

Li Huang, Yulin Yuan, Chloe Lewis, Chao Xia, Cankui Zhang, Joanna Kud, Joseph C Kuhl, Allan Caplan, Louise-Marie Dandurand, Fangming Xiao

Abstract read
In one paragraph

Article in The Plant cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. RNA-binding proteins orchestrating immunity in plants.The Plant journal : for cell and molecular biology · 2025
    Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Li HuangDepartment of Plant Sciences, University of Idaho, Moscow, ID, USA.ORCID 0009-0008-3079-0484
Yulin YuanDepartment of Plant Sciences, University of Idaho, Moscow, ID, USA.ORCID 0009-0007-9085-1421
Chloe LewisDepartment of Plant Sciences, University of Idaho, Moscow, ID, USA.ORCID 0009-0001-3954-5695
Chao XiaMaize Research Institute, Sichuan Agricultural University, Chengdu 611130, China.ORCID 0000-0003-1314-3644
Cankui ZhangDepartment of Agronomy, Purdue Center for Plant Biology, Purdue University, 915 Mitch Daniels Blvd, West Lafayette, IN 47907, USA.ORCID 0000-0002-9195-770X
Joanna KudDepartment of Entomology & Plant Pathology, University of Arkansas, Fayetteville, AR, USA.ORCID 0000-0003-3827-3381
Joseph C KuhlDepartment of Plant Sciences, University of Idaho, Moscow, ID, USA.ORCID 0000-0001-6149-636X
Allan CaplanDepartment of Plant Sciences, University of Idaho, Moscow, ID, USA.ORCID 0000-0002-1139-3124
Louise-Marie DandurandDepartment of Entomology, Plant Pathology and Nematology, University of Idaho, Moscow, ID, USA.ORCID 0000-0003-2689-2548
Fangming XiaoDepartment of Plant Sciences, University of Idaho, Moscow, ID, USA.ORCID 0000-0001-6044-9465

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The potato (Solanum tuberosum) cyst nematode Globodera pallida induces a multinucleate feeding site (syncytium) in potato roots as its sole source of nutrition. Here, we demonstrate that the G. pallida effector RING-H2 finger A1b (RHA1B), which is a functional ubiquitin ligase, interferes with the carbon catabolite repression 4 (CCR4)-negative on TATA-less (NOT) deadenylase-based RNA metabolism machinery that regulates syncytium development in G. pallida-infected potato. Specifically, RHA1B targets the CCR4-associated factor 1 (CAF1) and StNOT10 subunits of the CCR4-NOT complex for proteasome-mediated degradation, leading to upregulation of the cyclin gene StCycA2 involved in syncytium formation. The StCAF1 subunit of CCR4-NOT recruits the RNA binding protein StPUM5 to deadenylate StCycA2 mRNA, resulting in shortened poly-A tails of StCycA2 mRNA and subsequently reduced transcript levels. Knockdown of either subunit (StCAF1 or StNOT10) of the CCR4-NOT complex or StPUM5 in transgenic potato plants resulted in enlarged syncytia and enhanced susceptibility to G. pallida infection, which resembles the phenotypes of StCycA2 overexpression transgenic potato plants. Genetic analyses indicate that transgenic potato plants overexpressing RHA1B exhibit similar phenotypes as transgenic potato plants with knockdown of StNOT10, StCAF1, or StPUM5. Thus, our data suggest that G. pallida utilizes the RHA1B effector to manipulate RNA metabolism in host plants, thereby promoting syncytium development for parasitic success.

Identifiers

PMID39325717
PMCPMC11638110

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.