Evidence map›Paper›PMID 39324581›Full record

ArticlePest management science2025

Genome mining of Bacillus thuringiensis strain SY49.1 reveals novel candidate pesticidal and bioactive compounds.

Semih Yılmaz, Abeer Babiker Idris, Abdurrahman Ayvaz, Rıdvan Temizgül, Aysun Çetin, Mohammed A Hassan

Abstract read
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Article in Pest management science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

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3citing papers in PubMed
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1 · What the graph read from it

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Semih YılmazDepartment of Agricultural Biotechnology, Faculty of Agriculture, Erciyes University, Kayseri, Turkey.ORCID https://orcid.org/0000-0003-4835-1494
Abeer Babiker IdrisDepartment of Agricultural Sciences and Technologies, Graduate School of Natural and Applied Sciences, Erciyes University, Kayseri, Turkey.ORCID https://orcid.org/0000-0001-6436-5963
Abdurrahman AyvazDepartment of Biology, Faculty of Science, Erciyes University, Kayseri, Turkey.
Rıdvan TemizgülDepartment of Biology, Faculty of Science, Erciyes University, Kayseri, Turkey.
Aysun ÇetinDepartment of Medical Biochemistry, Faculty of Medicine, Erciyes University, Kayseri, Turkey.
Mohammed A HassanDepartment of Bioinformatics, Africa City of Technology, Khartoum, Sudan.

Funding

Bilimsel Araştırma Projeleri, Erciyes Üniversitesi and TÜBİTAK
6 · The paper itself

Abstract

backgroundBacillus thuringiensis SY49.1 (Bt SY49.1) strain has promising insecticidal and fungicidal activity against phytopathogens and pests. Therefore, we selected this strain for whole-genome sequencing (WGS), annotation and analysis, with the aim of identifying genes responsible for producing putative pesticidal toxins, antimicrobial metabolites and plant growth-promoting features.

resultsOur results showed that the SY49.1 genome is 6. 32 Mbp long with a GC content of 34.68%. Genome mining revealed the presence of multiple gene inventories for the biosynthesis of bioactive compounds such as insecticidal delta endotoxins, secondary metabolites, and several plant growth-promoting proteins. Multiple sequence alignment revealed residue variations in the toxic core of Cry1Ab when compared with known Cry1Ab sequences from Bt nomenclature databases. This suggests that the cry1Ab of SY49.1 is a new kind of its group. Among the predicted secondary metabolites, we found a kurstakin with a predicted peptide that differs from the known kurstakin peptide available in the NORINE database. In addition, lipopeptides extracted from SY49.1 suppressed the growth of Verticillium dahliae and Fusarium oxysporum.

conclusionWe anticipate that the complete genome of Bt SY49.1 may provide a model for properly understanding and studying antimicrobial compound mining, genetic diversity among the B. cereus group, and pathogenicity against insects. This is the first report on the WGS and mining of the Bt strain isolated from Turkey. © 2024 The Author(s). Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.

Indexed as

Bacillus thuringiensisBacillus thuringiensis ToxinsBacterial ProteinsEndotoxinsGenome, BacterialFusariumHemolysin ProteinsInsecticidesWhole Genome SequencingBacillus thuringiensis ToxinsBacterial ProteinsEndotoxinsHemolysin Proteinsinsecticidal crystal protein, Bacillus ThuringiensisInsecticidesBacillus thuringiensisfungicidegenome miningpesticidePGPRwhole‐genome sequencing

Identifiers

PMID39324581
PMCPMC11632210

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.