Evidence map›Paper›PMID 39323560›Full record

ArticleJAMIA open2024

Gaelen P Adam, Jay DeYoung, Alice Paul, Ian J Saldanha, Ethan M Balk, Thomas A Trikalinos, Byron C Wallace

Abstract read
In one paragraph

Article in JAMIA open, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Gaelen P AdamCenter for Evidence Synthesis in Health, Brown University School of Public Health, Providence, RI 02903, United States.
Jay DeYoungKhoury College of Computer Sciences, Northeastern University, Boston, MA 02115, United States.
Alice PaulDepartment of Biostatistics, Brown University School of Public Health, Providence, RI 02903, United States.
Ian J SaldanhaCenter for Evidence Synthesis in Health, Brown University School of Public Health, Providence, RI 02903, United States.
Ethan M BalkCenter for Evidence Synthesis in Health, Brown University School of Public Health, Providence, RI 02903, United States.
Thomas A TrikalinosCenter for Evidence Synthesis in Health, Brown University School of Public Health, Providence, RI 02903, United States.
Byron C WallaceKhoury College of Computer Sciences, Northeastern University, Boston, MA 02115, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Objectives: Development of search queries for systematic reviews (SRs) is time-consuming. In this work, we capitalize on recent advances in large language models (LLMs) and a relatively large dataset of natural language descriptions of reviews and corresponding Boolean searches to generate Boolean search queries from SR titles and key questions. Materials and Methods: We curated a training dataset of 10 346 SR search queries registered in PROSPERO. We used this dataset to fine-tune a set of models to generate search queries based on Mistral-Instruct-7b. We evaluated the models quantitatively using an evaluation dataset of 57 SRs and qualitatively through semi-structured interviews with 8 experienced medical librarians. Results: The model-generated search queries had median sensitivity of 85% (interquartile range [IQR] 40%-100%) and number needed to read of 1206 citations (IQR 205-5810). The interviews suggested that the models lack both the necessary sensitivity and precision to be used without scrutiny but could be useful for topic scoping or as initial queries to be refined. Discussion: Future research should focus on improving the dataset with more high-quality search queries, assessing whether fine-tuning the model on other fields, such as the population and intervention, improves performance, and exploring the addition of interactivity to the interface. Conclusions: The datasets developed for this project can be used to train and evaluate LLMs that map review descriptions to Boolean search queries. The models cannot replace thoughtful search query design but may be useful in providing suggestions for key words and the framework for the query.

Indexed as

artificial intelligencesystematic reviews as topic/methods

Identifiers

PMID39323560
PMCPMC11424077

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.