Evidence map›Paper›PMID 39323003›Full record

ArticleThe plant genome2024

Candidate selective sweeps in US wheat populations.

Sajal R Sthapit, Travis M Ruff, Marcus A Hooker, Bosen Zhang, Xianran Li, Deven R See

Abstract read
In one paragraph

Article in The plant genome, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Sajal R SthapitDepartment of Plant Pathology, Washington State University, Pullman, Washington, USA.ORCID https://orcid.org/0000-0003-4759-8639
Travis M RuffUSDA-ARS Wheat Health, Genetics, and Quality Research Unit, Washington State University, Pullman, Washington, USA.
Marcus A HookerDepartment of Crop and Soil Sciences, Washington State University, Pullman, Washington, USA.
Bosen ZhangWashington State University, Pullman, Washington, USA.
Xianran LiUSDA-ARS Wheat Health, Genetics, and Quality Research Unit, Washington State University, Pullman, Washington, USA.ORCID https://orcid.org/0000-0002-4252-6911
Deven R SeeDepartment of Plant Pathology, Washington State University, Pullman, Washington, USA.

Funding

National Institute of Food and Agriculture 2016-68004-24770
6 · The paper itself

Abstract

Exploration of novel alleles from ex situ collection is still limited in modern plant breeding as these alleles exist in genetic backgrounds of landraces that are not adapted to modern production environments. The practice of backcross breeding results in preservation of the adapted background of elite parents but leaves little room for novel alleles from landraces to be incorporated. Selection of adaptation-associated linkage blocks instead of the entire adapted background may allow breeders to incorporate more of the landrace's genetic background and to observe and evaluate novel alleles. Important adaptation-associated linkage blocks would have been selected over multiple cycles of breeding and hence are likely to exhibit signatures of positive selection or selective sweeps. We conducted genome-wide scan for candidate selective sweeps (CSS) using F

Indexed as

Plant BreedingSelection, GeneticTriticumAllelesGenome, PlantUnited States

Identifiers

PMID39323003
PMCPMC11628914

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.