Evidence map›Paper›PMID 39321257›Full record

ArticleThe Journal of experimental medicine2024

Precursor central memory versus effector cell fate and naïve CD4+ T cell heterogeneity.

Deeksha Deep, Herman Gudjonson, Chrysothemis C Brown, Samuel A Rose, Roshan Sharma, Yoselin A Paucar Iza, Seunghee Hong, Saskia Hemmers, Michail Schizas, Zhong-Min Wang and 5 more

Erratum issuedAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. A Dapl1Science advances · 2025
    Article
  9. Sterile production of interferons in the thymus.Journal of immunology (Baltimore, Md. : 1950) · 2025
    Review
  10. Article
  11. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors.

Deeksha Deep *Immunology Program, Memorial Sloan Kettering Cancer Center , New York, NY, USA.ORCID 0000-0003-4315-1354
Herman Gudjonson *Computational and Systems Biology Program, Memorial Sloan Kettering Cancer Center , New York, NY, USA.ORCID 0009-0001-0109-7946
Chrysothemis C BrownImmuno-Oncology, Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center , New York, NY, USA.ORCID 0000-0002-5834-926X
Samuel A RoseComputational and Systems Biology Program, Memorial Sloan Kettering Cancer Center , New York, NY, USA.ORCID 0000-0001-9701-0050
Roshan SharmaComputational and Systems Biology Program, Memorial Sloan Kettering Cancer Center , New York, NY, USA.ORCID 0000-0001-9886-009X
Yoselin A Paucar IzaImmunology and Microbial Pathogenesis Program, Weill Cornell Medicine Graduate School of Medical Sciences , New York, NY, USA.ORCID 0000-0003-2151-9058
Seunghee HongDrukier Institute for Children's Health at Weill Cornell Medicine , New York, NY, USA.ORCID 0000-0002-0134-1195
Saskia HemmersDepartment of Integrative Immunobiology, Duke University School of Medicine, Durham, NC, USA.ORCID 0000-0002-5575-0509
Michail SchizasImmunology Program, Memorial Sloan Kettering Cancer Center , New York, NY, USA.ORCID 0000-0002-9285-6951
Zhong-Min WangImmunology Program, Memorial Sloan Kettering Cancer Center , New York, NY, USA.ORCID 0000-0002-5538-1969
Yuezhou ChenDepartment of Medicine, Division of Allergy and Immunology, Division of Genetics, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.ORCID 0000-0003-3453-1988
Duane R WesemannDepartment of Medicine, Division of Allergy and Immunology, Division of Genetics, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.ORCID 0000-0002-6690-944X
Virginia PascualDrukier Institute for Children's Health at Weill Cornell Medicine , New York, NY, USA.ORCID 0000-0002-8806-8426
Dana Pe'erComputational and Systems Biology Program, Memorial Sloan Kettering Cancer Center , New York, NY, USA.ORCID 0000-0002-9259-8817
Alexander Y RudenskyImmunology Program, Memorial Sloan Kettering Cancer Center , New York, NY, USA.ORCID 0000-0003-1280-2898

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Weill Cornell/Rockefeller/Sloan-Kettering MST ProgramT32GM007739 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI HSU, KATHARINE C · 1985 to 2023
$51.1M
IMMUNOLOGIC BASIS OF RESISTANCE AND HYPERSENSITIVITYT32AI007306 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI Nora Amanda Barrett, Joshua A Boyce · 1985 to 2026
$12.2M
Tumor-specific T cell state dynamics and heterogeneity in early tumorigenesisU54CA209975 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI LESLIE, CHRISTINA S, RUDENSKY, ALEXANDER Y · 2016 to 2021
$11.8M
Weill Cornell/Rockefeller/Sloan Kettering MST ProgramT32GM152349 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI KATHARINE C HSU · 2024 to 2026
$6.6M
SELF PEPTIDES BOUND TO MHC CLASS II IN T CELL SELECTIONR01AI034206 · NIAID · UNIVERSITY OF WASHINGTON · PI Alexander Y Rudensky · 1998 to 2026
$6.4M
Decrypting IgE B Cell ImmunobiologyR01AI121394 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI WESEMANN, DUANE R. · 2016 to 2020
$3.1M
Elucidating Germinal Center-Mediated Antibody EvolutionR01AI139538 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI WESEMANN, DUANE R. · 2019 to 2022
$2.4M
Weill Cornell Initiative for Maximizing Student DevelopmentR25GM130494 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI CARRASCO, YAZMIN PAULINA, CESARMAN, ETHEL · 2019 to 2023
$2.4M
Dendritic cell heterogeneity and its role in pulmonary fungal infectionF30AI154660 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI DEEP, DEEKSHA · 2021 to 2024
$204k
Alan and Sandra Gerry Metastasis and Tumor Ecosystems CenterHoward Hughes Medical InstituteMemorial Sloan Kettering P30CA008748National Institute of Allergy and Infectious Diseases R01 A1034206NCI NIH HHS P30 CA008748NCI NIH HHS U54 CA209975NCI NIH HHS U54-CA209975NIAID NIH HHS F30 AI154660NIAID NIH HHS R01 AI121394NIAID NIH HHS R01 AI139538NIAID NIH HHS T32 AI007306NIGMS NIH HHS R25 GM130494NIGMS NIH HHS T32 GM007739NIGMS NIH HHS T32GM007739NIGMS NIH HHS T32 GM152349NIH HHS R01 AI121394Parker Institute for Cancer ImmunotherapyWeill CornellWellcome TrustWellcome Trust WT201483/Z/16/Z
6 · The paper itself

Abstract

Upon antigenic stimulation, naïve CD4+ T cells can give rise to phenotypically distinct effector T helper cells and long-lived memory T cells. We computationally reconstructed the in vivo trajectory of CD4+ T cell differentiation during a type I inflammatory immune response and identified two distinct differentiation paths for effector and precursor central memory T cells arising directly from naïve CD4+ T cells. Unexpectedly, our studies revealed heterogeneity among naïve CD4+ T cells, which are typically considered homogeneous save for their diverse T cell receptor usage. Specifically, a previously unappreciated population of naïve CD4+ T cells sensing environmental type I IFN exhibited distinct activation thresholds, suggesting that naïve CD4+ T cell differentiation potential may be influenced by environmental cues. This population was expanded in human viral infection and type I IFN response-lined autoimmunity. Understanding the relevance of naïve T cell heterogeneity to beneficial and maladaptive T cell responses may have therapeutic implications for adoptive T cell therapies in cancer immunotherapy and vaccination.

Indexed as

CD4-Positive T-LymphocytesCell DifferentiationImmunologic MemoryMemory T CellsAnimalsHumansInterferon Type ILymphocyte ActivationMiceInterferon Type I

Identifiers

PMID39321257
PMCPMC11448869

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.