Evidence map›Paper›PMID 39321214›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2024

Synthetic Lethal Targeting of CDK12-Deficient Prostate Cancer with PARP Inhibitors.

Jonathan Chou, Troy M Robinson, Emily A Egusa, Roshan Lodha, Meng Zhang, Michelle Badura, Mane Mikayelyan, Henry M Delavan, Jason Swinderman, Chris Wilson and 15 more

Abstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Jonathan ChouUCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, California.ORCID 0000-0003-1258-0391
Troy M Robinson *UCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, California.ORCID 0000-0001-5807-4465
Emily A Egusa *UCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, California.ORCID 0000-0003-2017-5708
Roshan LodhaUCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, California.ORCID 0009-0001-1568-6629
Meng ZhangUCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, California.ORCID 0000-0003-1042-6294
Michelle BaduraUCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, California.ORCID 0000-0001-5325-8097
Mane MikayelyanUCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, California.ORCID 0009-0005-1108-6801
Henry M DelavanUCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, California.ORCID 0009-0003-2571-9003
Jason SwindermanUCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, California.ORCID 0000-0002-4268-9788
Chris WilsonDepartment of Pharmaceutical Chemistry and the Small Molecule Discovery Center, University of California San Francisco, San Francisco, California.ORCID 0009-0001-8393-2908
Jun ZhuUCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, California.ORCID 0000-0003-2553-1337
Rajdeep DasUCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, California.ORCID 0000-0001-9280-6076
Minh NguyenClovis Oncology, Inc., Boulder, Colorado.ORCID 0000-0002-9857-5851
Andrea LoehrClovis Oncology, Inc., Boulder, Colorado.ORCID 0009-0008-6682-8405
Tony GolsorkhiClovis Oncology, Inc., Boulder, Colorado.ORCID 0000-0002-9146-6230
Andrew SimmonsClovis Oncology, Inc., Boulder, Colorado.ORCID 0000-0001-6075-0549
Wassim AbidaGenitourinary Oncology Service, Memorial Sloan Kettering Cancer Center, New York, New York.ORCID 0000-0002-9006-7043
Arul M ChinnaiyanDepartment of Pathology, University of Michigan, Ann Arbor, Michigan.ORCID 0000-0001-9282-3415
Michelle R ArkinDepartment of Pharmaceutical Chemistry and the Small Molecule Discovery Center, University of California San Francisco, San Francisco, California.ORCID 0000-0002-9366-6770
Eric J SmallUCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, California.ORCID 0000-0003-3191-6268
David A QuigleyUCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, California.ORCID 0000-0002-4726-1473
Lixing YangBen May Department for Cancer Research, University of Chicago, Chicago, Illinois.ORCID 0000-0001-9618-2117
Minkyu KimUCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, California.ORCID 0000-0001-9317-1658
Alan AshworthUCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, California.ORCID 0000-0003-1446-7878
Felix Y FengUCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, California.ORCID 0000-0002-0963-7687

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Elisa de Stanchina · 1985 to 2026
$347.4M
Translational InformaticsP30CA082103 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Kate Taylor Shumate · 1999 to 2026
$209.7M
Tissue/InformaticsP50CA186786 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Ganesh S Palapattu · 2014 to 2026
$27.6M
Molecular and Cellular Mechanisms in CancerT32CA108462 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GOGA, ANDREI · 2004 to 2024
$10.4M
DNA repair alterations in metastatic prostate cancer: functional and therapeutic implicationsR01CA230516 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ASHWORTH, ALAN, FENG, FELIX YI-CHUNG · 2018 to 2022
$2.7M
DOD Prostate Cancer Research Program (PCRP) W81XWH-20-1-0136National Cancer Institute (NCI) 1P50CA186786National Cancer Institute (NCI) 1R01CA230516NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA082103NCI NIH HHS P50 CA186786NCI NIH HHS R01 CA230516NCI NIH HHS T32 CA108462Prostate Cancer Foundation (PCF) Young Investigator Awards and Challenge Awards
6 · The paper itself

Abstract

purposeThe cyclin-dependent kinase (CDK), CDK12, is mutated or amplified in multiple cancers. We previously described a subtype of prostate cancer characterized predominantly by frameshift, loss-of-function mutations in CDK12. This subtype exhibits aggressive clinical features. EXPERIMENTAL

designUsing isogenic prostate cancer models generated by CRISPR/Cas9-mediated inactivation of CDK12, we conducted a chemical library screen of ∼1,800 FDA-approved drugs. We inhibited cyclin K and CDK13 and evaluated the effects on PARP inhibitor (PARPi) sensitivity. CDK12 truncation and kinase domain mutations were expressed in cell lines to determine the effects on PARPi sensitivity. Mice bearing control and CDK12-mutant prostate tumors were treated with rucaparib. Finally, we evaluated PSA responses in patients with CDK12 mutations treated with rucaparib on the TRITON2 trial.

resultsCancer cells lacking CDK12 are more sensitive to PARPi than isogenic wild-type cells, and sensitivity depends on the degree of CDK12 inhibition. Inhibiting cyclin K, but not CDK13, also led to PARPi sensitivity and suppressed homologous recombination. CDK12 truncation mutants remained sensitive to PARPi, whereas kinase domain mutants exhibited intermediate sensitivity. The PARPi rucaparib suppressed tumor growth in mice bearing CDK12-mutated tumors. Finally, 6 of 11 (55%) patients with prostate cancer with biallelic CDK12 mutations had reductions in serum PSA levels when treated with rucaparib on the TRITON2 clinical trial.

conclusionsIn prostate cancer, sensitivity to PARPi is dependent on the specific type and zygosity of the CDK12 mutation. PARPi monotherapy may have some activity in patients with prostate cancer with biallelic inactivating CDK12 alterations.

Indexed as

Cyclin-Dependent KinasesPoly(ADP-ribose) Polymerase InhibitorsProstatic NeoplasmsXenograft Model Antitumor AssaysAnimalsCell Line, TumorHumansIndolesMaleMiceMutationSynthetic Lethal MutationsCDK12 protein, humanCyclin-Dependent KinasesIndolesPoly(ADP-ribose) Polymerase Inhibitorsrucaparib

Identifiers

PMID39321214
PMCPMC11611633

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.