Evidence map›Paper›PMID 39319873›Full record

ArticleMemorias do Instituto Oswaldo Cruz2024

Description of the new HIV-1 intersubtype B/C circulating recombinant form (CRF146_BC) detected in Brazil.

Rodrigo Cunha Oliveira, Darren Martin, Juliana Sacramento Mota de Souza, Luiz Carlos Júnior Alcântara, Monick Lindenmeyer Guimarães, Carlos Brites, Joana Paixão Monteiro-Cunha

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Article in Memorias do Instituto Oswaldo Cruz, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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0cells of the map it votes in
2citing papers in PubMed
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1 · What the graph read from it

What it found

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2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Rodrigo Cunha OliveiraUniversidade Federal da Bahia, Departamento de Bioquímica e Biofísica, Núcleo de Bioinformática, Salvador, BA, Brasil.
Darren MartinUniversity of Cape Town, Institute of Infectious Disease and Molecular Medicine, Department of Integrative Biomedical Sciences, Computational Biology Group, Cape Town, South Africa.
Juliana Sacramento Mota de SouzaUniversidade Federal da Bahia, Departamento de Bioquímica e Biofísica, Núcleo de Bioinformática, Salvador, BA, Brasil.
Luiz Carlos Júnior AlcântaraFundação Oswaldo Cruz-Fiocruz, Instituto Oswaldo Cruz, Laboratório de Flavivírus, Rio de Janeiro, RJ, Brasil.
Monick Lindenmeyer GuimarãesFundação Oswaldo Cruz-Fiocruz, Instituto Oswaldo Cruz, Laboratório de AIDS e Imunologia Molecular, Rio de Janeiro, RJ, Brasil.
Carlos BritesUniversidade Federal da Bahia, Complexo Hospitalar Prof Edgard Santos, Laboratório de Pesquisa em Infectologia, Salvador, BA, Brasil.
Joana Paixão Monteiro-CunhaUniversidade Federal da Bahia, Departamento de Bioquímica e Biofísica, Núcleo de Bioinformática, Salvador, BA, Brasil.ORCID http://orcid.org/0000-0001-9074-457X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe human immunodeficiency virus 1 (HIV-1) infections in Brazil are predominantly caused by two subtypes, B and C.

objectivesHere we present the characterisation of a novel HIV-1 recombinant form, indicating a new Brazilian CRF_BC, named CRF146_BC.

methodsRDP, JphMM and Simplot recombination tools were used to evaluate the mosaic pattern.

findingsIn this work, we identified three HIV-1 nucleotide sequences previously classified as unique recombinant forms (URFs), plus one new partial genome sharing the same BC recombination pattern. The mosaic genome is almost entirely represented by the subtype C sequence, with a small subtype B recombination region in the pol gene, at the Integrase level. The phylogenetic analyses strongly indicate a common origin between the strains, which were isolated in Rio Grande do Sul, Rio de Janeiro and Bahia states. MAIN

conclusionsThus, the new HIV-1 CRF146_BC is circulating in three different Brazilian regions: South, Southeast and Northeast.

Indexed as

HIV-1HIV InfectionsPhylogenyRecombination, GeneticBrazilGenome, ViralGenotypeHumansRNA, ViralRNA, Viral

Identifiers

PMID39319873
PMCPMC11421422

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