Evidence map›Paper›PMID 39318535›Full record

ArticleiScience2024

Microenvironmental entropy dynamics analysis reveals novel insights into Notch-Delta-Jagged decision-making mechanism.

Aditi Ajith Pujar, Arnab Barua, Partha Sarathi Dey, Divyoj Singh, Ushasi Roy, Mohit Kumar Jolly, Haralampos Hatzikirou

Abstract read
In one paragraph

Article in iScience, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Aditi Ajith PujarDepartment of Bioengineering, Indian Institute of Science, Bangalore 560012, India.
Arnab BaruaTata Institute of Fundamental Research, Hyderabad 500046, India.
Partha Sarathi DeyDepartment of Bioengineering, Indian Institute of Science, Bangalore 560012, India.
Divyoj SinghDepartment of Bioengineering, Indian Institute of Science, Bangalore 560012, India.
Ushasi RoyDepartment of Bioengineering, Indian Institute of Science, Bangalore 560012, India.
Mohit Kumar JollyDepartment of Bioengineering, Indian Institute of Science, Bangalore 560012, India.
Haralampos HatzikirouMathematics Department, Khalifa University, P.O. Box: 127788, Abu Dhabi, UAE.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Notch-Delta-Jagged (NDJ) signaling among neighboring cells contributes crucially to spatiotemporal pattern formation and developmental decision-making. Despite numerous detailed mathematical models, their high-dimensionality parametric space limits analytical treatment, especially regarding local microenvironmental fluctuations. Using the low-dimensional dynamics of the recently postulated least microenvironmental uncertainty principle (LEUP) framework, we showcase how the LEUP formalism recapitulates a noisy NDJ spatial patterning. Our LEUP simulations show that local phenotypic entropy increases for lateral inhibition but decreases for lateral induction. This distinction allows us to identify a critical parameter that captures the transition from a Notch-Delta-driven lateral inhibition to a Notch-Jagged-driven lateral induction phenomenon and suggests random phenotypic patterning in the case of lack of dominance of either Notch-Delta or Notch-Jagged signaling. Our results enable an analytical treatment to map the high-dimensional dynamics of NDJ signaling on tissue-level patterning and can possibly be generalized to decode operating principles of collective cellular decision-making.

Indexed as

Biocomputational methodBiological constraintsFlux dataIn silico biologyMolecular network

Identifiers

PMID39318535
PMCPMC11420447

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.