Evidence map›Paper›PMID 39318073›Full record

ArticleAdvanced materials (Deerfield Beach, Fla.)2024

GraphBNC: Machine Learning-Aided Prediction of Interactions Between Metal Nanoclusters and Blood Proteins.

Antti Pihlajamäki, María Francisca Matus, Sami Malola, Hannu Häkkinen

Abstract read
In one paragraph

Article in Advanced materials (Deerfield Beach, Fla.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Multiscale chiral zeros in biomolecules.Communications chemistry · 2025
    Article
  6. Machine Learning-Enhanced Nanoparticle Design for Precision Cancer Drug Delivery.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Antti PihlajamäkiDepartment of Physics, Nanoscience Center, University of Jyväskylä, Jyväskylä, FI-40014, Finland.
María Francisca MatusDepartment of Physics, Nanoscience Center, University of Jyväskylä, Jyväskylä, FI-40014, Finland.ORCID 0000-0002-4816-531X
Sami MalolaDepartment of Physics, Nanoscience Center, University of Jyväskylä, Jyväskylä, FI-40014, Finland.
Hannu HäkkinenDepartment of Physics, Nanoscience Center, University of Jyväskylä, Jyväskylä, FI-40014, Finland.ORCID 0000-0002-8558-5436

Funding

Academy of Finland 351582Academy of Finland 355083
6 · The paper itself

Abstract

Hybrid nanostructures between biomolecules and inorganic nanomaterials constitute a largely unexplored field of research, with the potential for novel applications in bioimaging, biosensing, and nanomedicine. Developing such applications relies critically on understanding the dynamical properties of the nano-bio interface. This work introduces and validates a strategy to predict atom-scale interactions between water-soluble gold nanoclusters (AuNCs) and a set of blood proteins (albumin, apolipoprotein, immunoglobulin, and fibrinogen). Graph theory and neural networks are utilized to predict the strengths of interactions in AuNC-protein complexes on a coarse-grained level, which are then optimized in Monte Carlo-based structure search and refined to atomic-scale structures. The training data is based on extensive molecular dynamics (MD) simulations of AuNC-protein complexes, and the validating MD simulations show the robustness of the predictions. This strategy can be generalized to any complexes of inorganic nanostructures and biomolecules provided that one generates enough data about the interactions, and the bioactive parts of the nanostructure can be coarse-grained rationally.

Indexed as

Blood ProteinsGoldMachine LearningMetal NanoparticlesMolecular Dynamics SimulationMonte Carlo MethodNeural Networks, ComputerProtein BindingBlood ProteinsGoldgraphsmachine learningmetal nanoclustersmolecular dynamicsnano–bio interface

Identifiers

PMID39318073
PMCPMC11586822

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.