Evidence map›Paper›PMID 39317859›Full record

ArticleGenes & genomics2024

Genome-wide analysis of the potato GRF gene family and their expression profiles in response to hormone and Ralstonia solanacearum infection.

Changhe Wei, Jinli Yan, Pan Xu, Xia Wu, Yan Yi, Xuemei Yue, Caiyan Chen, Lang Yan, Mengmeng Yin

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Article in Genes & genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Targeted Regulation ofPlants (Basel, Switzerland) · 2025
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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Changhe WeiPanxi Crops Research and Utilization Key Laboratory of Sichuan Province, College of Agricultural Science, Xichang University, Liangshan, China.
Jinli YanPanxi Crops Research and Utilization Key Laboratory of Sichuan Province, College of Agricultural Science, Xichang University, Liangshan, China.
Pan XuSichuan Institute of Atomic Energy, Chengdu, China.
Xia WuPanxi Crops Research and Utilization Key Laboratory of Sichuan Province, College of Agricultural Science, Xichang University, Liangshan, China.
Yan YiPanxi Crops Research and Utilization Key Laboratory of Sichuan Province, College of Agricultural Science, Xichang University, Liangshan, China.
Xuemei YuePanxi Crops Research and Utilization Key Laboratory of Sichuan Province, College of Agricultural Science, Xichang University, Liangshan, China.
Caiyan ChenPanxi Crops Research and Utilization Key Laboratory of Sichuan Province, College of Agricultural Science, Xichang University, Liangshan, China.
Lang YanPanxi Crops Research and Utilization Key Laboratory of Sichuan Province, College of Agricultural Science, Xichang University, Liangshan, China. langyan0807@hotmail.com.
Mengmeng YinPanxi Crops Research and Utilization Key Laboratory of Sichuan Province, College of Agricultural Science, Xichang University, Liangshan, China. nmengyin@126.com.

Funding

National Natural Science Foundation of China 32060720Ph.D. Programs Foundation of Xichang University YBZ202002Scientific Research Foundation of Panxi Crops Research and Utilization Key Laboratory of Sichuan Province XNFZ2202
6 · The paper itself

Abstract

backgroundPotato (Solanum tuberosum L.) is one of the most economically significant crops globally. Nevertheless, potato cultivation is becoming increasingly susceptible to a multitude of diseases, including bacterial wilt, which is caused by Ralstonia solanacearum.

objectiveTo identify the GRF gene family in potatoes and to examine their expression profiles in response to hormones and R. solanacearum infection.

methodsA comprehensive genome-wide analysis was conducted to identify the GRF gene family in the potato genome.

resultsA total of 13 GRF genes were identified from the latest potato genome, including five StGRFs belonging to the ɛ group and eight of the non-ɛ group. The transcriptional responses of the StGRFs to two biotic stress-related phytohormones (SA and MeJA) were defined, as well as the response to infection with R. solanacearum in a bacterial wilt-sensitive cultivar, S. tuberosum 'Qingshu 9'. Many StGRF genes exhibited high induction levels in response to R. solanacearum infection and SA treatment while displaying a marked decline in expression in the presence of MeJA. Furthermore, protein interaction network analysis revealed that the StGRF proteins interact with several candidate target proteins, indicating that GRF proteins are ubiquitous regulators in potatoes. However, the associations between two type III effectors (T3Es) RipAC/RipH2 from R. solanacearum isolates and StGRF7 were not detectable in a yeast two-hybrid assay.

conclusionThis study provides comprehensive information on the GRF gene family and lays a foundation for further research on the molecular mechanism of potato biotic stress adaptation.

Indexed as

Gene Expression Regulation, PlantMultigene FamilyPlant DiseasesPlant Growth RegulatorsPlant ProteinsRalstonia solanacearumSolanum tuberosumGenome, PlantGenome-Wide Association StudyPlant Growth RegulatorsPlant ProteinsInfection hormonePotatoRalstonia solanacearumStGRFs

Identifiers

PMID39317859

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