Evidence map›Paper›PMID 39317199›Full record

ArticleMolecular cell2024

Alternative translation initiation produces synaptic organizer proteoforms with distinct localization and functions.

Paul Jongseo Lee, Yu Sun, Alexa R Soares, Caroline Fai, Marina R Picciotto, Junjie U Guo

Abstract read
In one paragraph

Article in Molecular cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Structural basis for non-AUG translation regulation by 5MPs.bioRxiv : the preprint server for biology · 2025
    Article
  6. Review
  7. Article
  8. Review
  9. Review
  10. Review
  11. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Paul Jongseo LeeDepartment of Neuroscience, Yale University School of Medicine, New Haven, CT 06510, USA; Interdepartmental Neuroscience Program, Yale University, New Haven, CT 06520, USA.
Yu SunDepartment of Neuroscience, Yale University School of Medicine, New Haven, CT 06510, USA.
Alexa R SoaresDepartment of Psychiatry, Yale University School of Medicine, New Haven, CT 06508, USA; Interdepartmental Neuroscience Program, Yale University, New Haven, CT 06520, USA.
Caroline FaiDepartment of Psychiatry, Yale University School of Medicine, New Haven, CT 06508, USA.
Marina R PicciottoDepartment of Psychiatry, Yale University School of Medicine, New Haven, CT 06508, USA; Interdepartmental Neuroscience Program, Yale University, New Haven, CT 06520, USA.
Junjie U GuoDepartment of Neuroscience, Yale University School of Medicine, New Haven, CT 06510, USA; Interdepartmental Neuroscience Program, Yale University, New Haven, CT 06520, USA. Electronic address: junjie.guo@yale.edu.

Funding

Interdepartmental Neuroscience Program (INP)T32NS041228 · NINDS · YALE UNIVERSITY · PI Charles A Greer, Marina R Picciotto · 2001 to 2026
$12.0M
Cholinergic Contribution to Circuits Underlying DepressionR01MH077681 · NIMH · YALE UNIVERSITY · PI MINEUR, YANN SEBASTIEN, PICCIOTTO, MARINA R · 2006 to 2025
$7.0M
Molecular and cellular determinants of RNA repeat-associated propertiesDP2GM132930 · NIGMS · YALE UNIVERSITY · PI GUO, JUNJIE · 2018 to 2018
$2.5M
Post-transcriptional mRNA regulation in the mammalian nervous systemR35GM152208 · NIGMS · YALE UNIVERSITY · PI Junjie Guo · 2024 to 2026
$1.5M
Pacific Bioscience Sequel II sequencing system for the Yale Center for Genome Analysis (YCGA)S10OD028669 · OD · YALE UNIVERSITY · PI MANE, SHRIKANT M · 2020 to 2020
$407k
NIGMS NIH HHS DP2 GM132930NIGMS NIH HHS R35 GM152208NIH HHS S10 OD028669NIMH NIH HHS R01 MH077681NINDS NIH HHS T32 NS041228
6 · The paper itself

Abstract

While many mRNAs contain more than one translation initiation site (TIS), the functions of most alternative TISs and their corresponding protein isoforms (proteoforms) remain undetermined. Here, we showed that alternative usage of CUG and AUG TISs in neuronal pentraxin receptor (NPR) mRNA produced two proteoforms, of which the ratio was regulated by RNA secondary structure and neuronal activity. Downstream AUG initiation truncated the N-terminal transmembrane domain and produced a secreted NPR proteoform sufficient in promoting synaptic clustering of AMPA-type glutamate receptors. Mutations that altered the ratio of NPR proteoforms reduced AMPA receptors in parvalbumin-positive interneurons and affected learning behaviors in mice. In addition to NPR, upstream AUU-initiated N-terminal extension of C1q-like synaptic organizers anchored these otherwise secreted factors to the membrane. Together, these results uncovered the plasticity of N-terminal signal sequences regulated by alternative TIS usage as a potentially widespread mechanism in diversifying protein localization and functions.

Indexed as

Nerve Tissue ProteinsReceptors, AMPASynapsesAnimalsCalcium-Binding ProteinsCodon, InitiatorC-Reactive ProteinHEK293 CellsHumansInterneuronsMaleMiceMice, Inbred C57BLMutationNeural Cell Adhesion MoleculesNeuronal PlasticityCalcium-Binding ProteinsCodon, InitiatorC-Reactive ProteinNerve Tissue ProteinsNeural Cell Adhesion MoleculesNrxn1 protein, mouseParvalbuminsPentraxinsProtein IsoformsReceptors, AMPARNA, MessengerAMPA receptorneuronal pentraxinproteoformribosomeRNA structuresecretory proteinsignal sequencesynaptic organizertranslation initiationtransmembrane domain

Identifiers

PMID39317199
PMCPMC11490368

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.