Evidence map›Paper›PMID 39315813›Full record

ArticleJournal of virology2024

Translation of HIV-1 unspliced RNA is regulated by 5' untranslated region structure.

Zetao Cheng, Saiful Islam, Joseph G Kanlong, Madeline Sheppard, Heewon Seo, Olga A Nikolaitchik, Michael G Kearse, Vinay K Pathak, Karin Musier-Forsyth, Wei-Shau Hu

Abstract read
In one paragraph

Article in Journal of virology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Transcription start site heterogeneity controls MDA5 sensing of unspliced HIV-1 RNAs.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Zetao Cheng *Viral Recombination Section, HIV Dynamics and Replication Program, National Cancer Institute, Frederick, Maryland, USA.
Saiful Islam *Viral Recombination Section, HIV Dynamics and Replication Program, National Cancer Institute, Frederick, Maryland, USA.
Joseph G Kanlong *Department of Chemistry and Biochemistry, Center for Retrovirus Research, Center for RNA Biology, Ohio State University, Columbus, Ohio, USA.ORCID 0009-0004-3088-5257
Madeline SheppardDepartment of Chemistry and Biochemistry, Center for Retrovirus Research, Center for RNA Biology, Ohio State University, Columbus, Ohio, USA.
Heewon SeoDepartment of Chemistry and Biochemistry, Center for Retrovirus Research, Center for RNA Biology, Ohio State University, Columbus, Ohio, USA.
Olga A NikolaitchikViral Recombination Section, HIV Dynamics and Replication Program, National Cancer Institute, Frederick, Maryland, USA.
Michael G KearseDepartment of Biological Chemistry and Pharmacology, Center for RNA Biology, Ohio State University, Columbus, Ohio, USA.
Vinay K PathakViral Mutation Section, HIV Dynamics and Replication Program, National Cancer Institute, Frederick, Maryland, USA.
Karin Musier-ForsythDepartment of Chemistry and Biochemistry, Center for Retrovirus Research, Center for RNA Biology, Ohio State University, Columbus, Ohio, USA.ORCID 0000-0002-0354-4172
Wei-Shau HuViral Recombination Section, HIV Dynamics and Replication Program, National Cancer Institute, Frederick, Maryland, USA.ORCID 0000-0001-7733-623X

Funding

Structural Biology CoreU54AI170855 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI Gregory A. Voth · 2022 to 2026
$36.7M
RNA binding and packaging by retroviral Gag proteinsR01AI153216 · NIAID · OHIO STATE UNIVERSITY · PI MUSIER-FORSYTH, KARIN M · 2020 to 2025
$4.9M
Non-canonical mechanisms of translation initiation and regulationR35GM146924 · NIGMS · OHIO STATE UNIVERSITY · PI Michael G. Kearse · 2022 to 2026
$1.9M
Molecular biophysics predoctoral training at the Ohio State UniversityT32GM144293 · NIGMS · OHIO STATE UNIVERSITY · PI CHARLES E BELL, Ralf A Bundschuh · 2022 to 2026
$1.1M
NIAID NIH HHS R01 AI153216NIAID NIH HHS U54 AI170855NIGMS NIH HHS R35 GM146924NIGMS NIH HHS T32 GM144293
6 · The paper itself

Abstract

HIV-1 must generate infectious virions to spread to new hosts and HIV-1 unspliced RNA (HIV-1 RNA) plays two central roles in this process. HIV-1 RNA serves as an mRNA that is translated to generate proteins essential for particle production and replication, and it is packaged into particles as the viral genome. HIV-1 uses several transcription start sites to generate multiple RNAs that differ by a few nucleotides at the 5' end, including those with one (1G) or three (3G) 5' guanosines. The virus relies on host machinery to translate its RNAs in a cap-dependent manner. Here, we demonstrate that the 5' context of HIV-1 RNA affects the efficiency of translation both

Indexed as

5' Untranslated RegionsHIV-1Protein BiosynthesisRNA, ViralGene Expression Regulation, ViralGenome, ViralHEK293 CellsHumansMutationNucleic Acid ConformationVirus Replication5' Untranslated RegionsRNA, Viral5' UTRHIVRNARNA structuretranscription start sitetranslation

Identifiers

PMID39315813
PMCPMC11494990

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.