Evidence map›Paper›PMID 39314498›Full record

ArticleArXiv2024

wgatools: an ultrafast toolkit for manipulating whole genome alignments.

Wenjie Wei, Songtao Gui, Jian Yang, Erik Garrison, Jianbing Yan, Hai-Jun Liu

Abstract readPreprint
PubMed Full text at PMC
In one paragraph

Article in ArXiv, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Wenjie WeiNational Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, 430070, Wuhan, China.ORCID 0000-0003-4105-9693
Songtao GuiNational Key Laboratory of Wheat Improvement, College of Life Sciences, Shandong Agricultural University, 271018, Tai'an, China.ORCID 0000-0001-6718-982X
Jian YangSchool of Life Sciences, Westlake University, 310030, Hangzhou, China.ORCID 0000-0003-2001-2474
Erik GarrisonDepartment of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, 38163, Memphis, TN, USA.ORCID 0000-0003-3821-631X
Jianbing YanNational Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, 430070, Wuhan, China.ORCID 0000-0001-8650-7811
Hai-Jun LiuYazhouwan National Laboratory, 572024, Sanya, China.ORCID 0000-0001-7717-893X

Funding

A compendium of complete primate reference genomes to facilitate conservation, genomics, and ecologyR01HG013017 · NHGRI · UNIVERSITY OF CALIFORNIA BERKELEY · PI Erik Garrison, Matthew William Mitchell · 2023 to 2026
$1.9M
NHGRI NIH HHS R01 HG013017
6 · The paper itself

Abstract

Summary: With the rapid development of long-read sequencing technologies, the era of individual complete genomes is approaching. We have developed Availability and Implementation:

Indexed as

Data structureLong-read sequencingRustVariant callingWhole genome alignment

Identifiers

PMID39314498
PMCPMC11419180

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.