Evidence map›Paper›PMID 39314305›Full record

ArticlebioRxiv : the preprint server for biology2024

ATP-dependent remodeling of chromatin condensates uncovers distinct mesoscale effects of two remodelers.

Camille Moore, Emily Wong, Upneet Kaur, Un Seng Chio, Ziling Zhou, Megan Ostrowski, Ke Wu, Iryna Irkliyenko, Sean Wang, Vijay Ramani and 1 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Camille MooreDepartment of Biochemistry and Biophysics, University of California, San Francisco; San Francisco, CA 94158, USA.ORCID 0000-0002-3324-789X
Emily WongDepartment of Biochemistry and Biophysics, University of California, San Francisco; San Francisco, CA 94158, USA.
Upneet KaurDepartment of Biochemistry and Biophysics, University of California, San Francisco; San Francisco, CA 94158, USA.
Un Seng ChioDepartment of Biochemistry and Biophysics, University of California, San Francisco; San Francisco, CA 94158, USA.
Ziling ZhouDepartment of Biochemistry and Biophysics, University of California, San Francisco; San Francisco, CA 94158, USA.
Megan OstrowskiGladstone Institute for Data Science & Biotechnology; San Francisco, CA 94158, USA.
Ke WuGladstone Institute for Data Science & Biotechnology; San Francisco, CA 94158, USA.
Iryna IrkliyenkoGladstone Institute for Data Science & Biotechnology; San Francisco, CA 94158, USA.
Sean WangGladstone Institute for Data Science & Biotechnology; San Francisco, CA 94158, USA.
Vijay RamaniDepartment of Biochemistry and Biophysics, University of California, San Francisco; San Francisco, CA 94158, USA.
Geeta J NarlikarDepartment of Biochemistry and Biophysics, University of California, San Francisco; San Francisco, CA 94158, USA.

Funding

Measuring the lifetime and mechanical stability of phase-separated heterochromatin domainsR35GM127020 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GEETA J NARLIKAR · 2018 to 2026
$7.3M
Tetrad: Genetics, Cell Biology, Biochemistry and Molecular Biology Training GrantT32GM139786 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Natalia Jura, David Paul Toczyski · 2021 to 2026
$6.5M
Modulation and functional characterization of protein condensation in chromatin organizationU01DK127421 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HUANG, BO, NARLIKAR, GEETA J · 2020 to 2024
$5.4M
SINGLE-CELL CHEMICAL TRANSCRIPTOMIC DISSECTION OF AN ESSENTIAL TRANSCRIPTION FACTOR NETWORKDP2HG012442 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI RAMANI, VIJAY · 2021 to 2024
$2.6M
NHGRI NIH HHS DP2 HG012442NIDDK NIH HHS U01 DK127421NIGMS NIH HHS R35 GM127020NIGMS NIH HHS T32 GM139786
6 · The paper itself

Abstract

ATP-dependent chromatin remodeling enzymes mobilize nucleosomes, but how such mobilization affects chromatin condensation is unclear. Here, we investigate effects of two major remodelers, ACF and RSC using chromatin condensates and single-molecule footprinting. We find that both remodelers inhibit the formation of condensed chromatin. However, the remodelers have distinct effects on pre-formed chromatin condensates. ACF spaces nucleosomes without de-condensing the chromatin, explaining how ACF maintains nucleosome organization in transcriptionally repressed genomic regions. In contrast, RSC catalyzes ATP-dependent de-condensation of chromatin. Surprisingly, RSC also drives micron-scale movements of entire condensates. These newly uncovered activities of RSC explain its central role in transcriptional activation. The biological importance of remodelers may thus reflect both their effects on nucleosome mobilization and the corresponding consequences on chromatin dynamics at the mesoscale.

Identifiers

PMID39314305
PMCPMC11418981

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.