Evidence map›Paper›PMID 39314113›Full record

ArticleThe journal of physical chemistry letters2024

Quantification of Anisotropy in Exchange and Dispersion Interactions: A Simple Model for Physics-Based Force Fields.

Kristian Kříž, David van der Spoel

Abstract read
In one paragraph

Article in The journal of physical chemistry letters, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. plotXVG: Batch Generation of Publication-Quality Graphs from GROMACS Output.Journal of chemical information and modeling · 2026
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Kristian KřížScience for Life Laboratory, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3, Box 596, SE-75124 Uppsala, Sweden.ORCID 0000-0001-9072-0949
David van der SpoelScience for Life Laboratory, Department of Cell and Molecular Biology, Uppsala University, Husargatan 3, Box 596, SE-75124 Uppsala, Sweden.ORCID 0000-0002-7659-8526

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In some compounds, exchange repulsion is orientation dependent. However, in contrast to quantum chemical methods that treat exchange explicitly, empirical models assume exchange to be spherically symmetric, yielding an average description only. Here we quantify the anisotropy of exchange and dispersion energy for hydrogen halides and water by probing these compounds with a helium atom using the symmetry-adapted perturbation theory (SAPT). The exchange interaction is reduced by up to 33% due to the σ-hole in hydrogen iodide, depending on the location of the probe. We demonstrate how this anisotropy can be modeled in empirical force fields either using an angle-dependent potential or by introducing virtual sites, reducing the error in the empirical model by a factor of 5 compared to isotropic atoms. Lone-pairs on water, positioned close to perpendicular to the plane of the molecule, on a line with the oxygen atom, and, surprisingly, σ-holes on water both modulate the exchange interaction strongly. Both lone-pairs and σ-holes can be modeled by virtual sites, leading to an 80% reduced error.

Identifiers

PMID39314113
PMCPMC11457221

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.