Evidence map›Paper›PMID 39313616›Full record

ArticleNature genetics2024

Federated analysis of autosomal recessive coding variants in 29,745 developmental disorder patients from diverse populations.

V Kartik Chundru, Zhancheng Zhang, Klaudia Walter, Sarah J Lindsay, Petr Danecek, Ruth Y Eberhardt, Eugene J Gardner, Daniel S Malawsky, Emilie M Wigdor, Rebecca Torene and 19 more

Abstract read
In one paragraph

Article in Nature genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Genotypic and phenotypic consequences of domestication in dogs.bioRxiv : the preprint server for biology · 2025
    Article
  6. Article
  7. Review
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors.

V Kartik ChundruWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0002-6348-5565
Zhancheng ZhangGeneDx, Gaithersburg, MD, USA.
Klaudia WalterWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0003-4448-0301
Sarah J LindsayWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0002-0965-3070
Petr DanecekWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Ruth Y EberhardtWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0001-6152-1369
Eugene J GardnerWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0001-9671-1533
Daniel S MalawskyWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Emilie M WigdorWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Rebecca ToreneGeneDx, Gaithersburg, MD, USA.ORCID http://orcid.org/0000-0002-4370-3625
Kyle RettererGeneDx, Gaithersburg, MD, USA.
Caroline F WrightDepartment of Clinical and Biomedical Sciences, University of Exeter Medical School, Royal Devon and Exeter Hospital, Exeter, UK.ORCID http://orcid.org/0000-0003-2958-5076
Hildur ÓlafsdóttirGeneDx Iceland, Reykjavík, Iceland.
Maria J Guillen SacotoGeneDx, Gaithersburg, MD, USA.
Akif AyazIstanbul Medipol University, Medical School, Department of Medical Genetics, Istanbul, Turkey.
Ismail Hakki AkbeyazMarmara University Medical Faculty, Pendik Training and Research Hospital, Department of Pediatric Neurology, Istanbul, Turkey.
Dilşad TürkdoğanMarmara University Medical Faculty, Pendik Training and Research Hospital, Department of Pediatric Neurology, Istanbul, Turkey.
Aaisha Ibrahim Al BalushiThe Royal Hospital, Muscat Al Ghubra Area 111 Seeb, Muscat, Oman.
Aida Bertoli-AvellaMedical Genetics, CENTOGENE GmbH, Rostock, Germany.ORCID http://orcid.org/0000-0001-9544-1877
Peter BauerMedical Genetics, CENTOGENE GmbH, Rostock, Germany.
Emmanuelle Szenker-RaviLaboratory of Human Genetics & Therapeutics, BESE, KAUST, Thuwal, Saudi Arabia.ORCID http://orcid.org/0000-0003-4839-737X
Bruno ReversadeLaboratory of Human Genetics & Therapeutics, BESE, KAUST, Thuwal, Saudi Arabia.ORCID http://orcid.org/0000-0002-4070-7997
Kirsty McWalterGeneDx, Gaithersburg, MD, USA.ORCID http://orcid.org/0000-0002-1654-9036
Eamonn SheridanWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Helen V FirthWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Matthew E HurlesWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0002-2333-7015
Kaitlin E SamochaWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0002-1704-3352
Vincent D Ustach *GeneDx, Gaithersburg, MD, USA.ORCID http://orcid.org/0000-0001-8299-3998
Hilary C Martin *Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK. hcm@sanger.ac.uk.ORCID http://orcid.org/0000-0002-4454-9084

Funding

Wellcome TrustWellcome Trust (Wellcome) 220540/Z/20/A
6 · The paper itself

Abstract

Autosomal recessive coding variants are well-known causes of rare disorders. We quantified the contribution of these variants to developmental disorders in a large, ancestrally diverse cohort comprising 29,745 trios, of whom 20.4% had genetically inferred non-European ancestries. The estimated fraction of patients attributable to exome-wide autosomal recessive coding variants ranged from ~2-19% across genetically inferred ancestry groups and was significantly correlated with average autozygosity. Established autosomal recessive developmental disorder-associated (ARDD) genes explained 84.0% of the total autosomal recessive coding burden, and 34.4% of the burden in these established genes was explained by variants not already reported as pathogenic in ClinVar. Statistical analyses identified two novel ARDD genes: KBTBD2 and ZDHHC16. This study expands our understanding of the genetic architecture of developmental disorders across diverse genetically inferred ancestry groups and suggests that improving strategies for interpreting missense variants in known ARDD genes may help diagnose more patients than discovering the remaining genes.

Indexed as

Developmental DisabilitiesGenes, RecessiveAcyltransferasesCohort StudiesExomeFemaleGenetic Predisposition to DiseaseGenetic VariationHumansMaleMutation, MissenseAcyltransferases

Identifiers

PMID39313616
PMCPMC11525179

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.