Evidence map›Paper›PMID 39313562›Full record

ArticleNature plants2024

The Arabidopsis U1 snRNP regulates mRNA 3'-end processing.

Anchilie F Mangilet, Joachim Weber, Sandra Schüler, Manon Adler, Eneza Yoeli Mjema, Paula Heilmann, Angie Herold, Monique Renneberg, Luise Nagel, Irina Droste-Borel and 6 more

Abstract read
In one paragraph

Article in Nature plants, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. RNA regulation in plants.Science China. Life sciences · 2026
    Review
  2. Review
  3. Article
  4. bioRxiv : the preprint server for biology · 2025
    Article
  5. Article
  6. Non-canonical functions.Nature plants · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Anchilie F MangiletInstitute of Biology and Environmental Sciences, University of Oldenburg, Oldenburg, Germany.ORCID http://orcid.org/0000-0001-7166-5235
Joachim WeberInstitute of Biology and Environmental Sciences, University of Oldenburg, Oldenburg, Germany.ORCID http://orcid.org/0000-0003-0408-9543
Sandra SchülerInstitute of Biology and Environmental Sciences, University of Oldenburg, Oldenburg, Germany.ORCID http://orcid.org/0009-0002-6418-6820
Manon AdlerInstitute of Biology and Environmental Sciences, University of Oldenburg, Oldenburg, Germany.
Eneza Yoeli MjemaInstitute of Biology and Environmental Sciences, University of Oldenburg, Oldenburg, Germany.
Paula HeilmannInstitute of Biology, Department of Genetics, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany.
Angie HeroldInstitute of Biology, Department of Genetics, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany.ORCID http://orcid.org/0009-0005-5392-5255
Monique RennebergInstitute of Biology, Department of Genetics, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany.ORCID http://orcid.org/0009-0000-1934-3749
Luise NagelInstitute of Biology, Department of Genetics, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany.
Irina Droste-BorelProteome Center, University of Tuebingen, Tuebingen, Germany.ORCID http://orcid.org/0000-0001-5491-7162
Samuel StreicherInstitute of Agricultural and Nutritional Sciences, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany.
Thomas SchmutzerInstitute of Agricultural and Nutritional Sciences, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany.ORCID http://orcid.org/0000-0003-1073-6719
Gregor RotInstitute of Molecular Life Sciences of the University of Zurich and Swiss Institute of Bioinformatics, Zurich, Switzerland.ORCID http://orcid.org/0009-0001-7888-6687
Boris MacekProteome Center, University of Tuebingen, Tuebingen, Germany.ORCID http://orcid.org/0000-0002-1206-2458
Cornelius SchmidtkeInstitute of Biology, Department of Genetics, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany.
Sascha LaubingerInstitute of Biology and Environmental Sciences, University of Oldenburg, Oldenburg, Germany. sascha.laubinger@genetik.uni-halle.de.ORCID http://orcid.org/0000-0002-6682-0728

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) 400681449/GRK2498 TP13Deutsche Forschungsgemeinschaft (German Research Foundation) LA2633-4/2
6 · The paper itself

Abstract

The removal of introns by the spliceosome is a key gene regulatory mechanism in eukaryotes, with the U1 snRNP subunit playing a crucial role in the early stages of splicing. Studies in metazoans show that the U1 snRNP also conducts splicing-independent functions, but the lack of genetic tools and knowledge about U1 snRNP-associated proteins have limited the study of such splicing-independent functions in plants. Here we describe an RNA-centric approach that identified more than 200 proteins associated with the Arabidopsis U1 snRNP and revealed a tight link to mRNA cleavage and polyadenylation factors. Interestingly, we found that the U1 snRNP protects mRNAs against premature cleavage and polyadenylation within introns-a mechanism known as telescripting in metazoans-while also influencing alternative polyadenylation site selection in 3'-UTRs. Overall, our work provides a comprehensive view of U1 snRNP interactors and reveals novel functions in regulating mRNA 3'-end processing in Arabidopsis, laying the groundwork for understanding non-canonical functions of plant U1 snRNPs.

Indexed as

ArabidopsisArabidopsis ProteinsRibonucleoprotein, U1 Small NuclearRNA, MessengerGene Expression Regulation, PlantIntronsPolyadenylationRNA 3' End ProcessingRNA, PlantArabidopsis ProteinsRibonucleoprotein, U1 Small NuclearRNA, MessengerRNA, Plant

Identifiers

PMID39313562
PMCPMC11489095

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.