Evidence map›Paper›PMID 39312774›Full record

ArticleJournal of proteome research2024

Deep Profiling of Plasma Proteoforms with Engineered Nanoparticles for Top-Down Proteomics.

Che-Fan Huang, Michael A Hollas, Aniel Sanchez, Mrittika Bhattacharya, Giang Ho, Ambika Sundaresan, Michael A Caldwell, Xiaoyan Zhao, Ryan Benz, Asim Siddiqui and 1 more

Abstract read
In one paragraph

Article in Journal of proteome research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Che-Fan HuangProteomics Center of Excellence, Northwestern University, Evanston, Illinois 60208, United States.ORCID 0000-0002-5799-1533
Michael A HollasProteomics Center of Excellence, Northwestern University, Evanston, Illinois 60208, United States.ORCID 0000-0002-0797-3134
Aniel SanchezProteomics Center of Excellence, Northwestern University, Evanston, Illinois 60208, United States.
Mrittika BhattacharyaSeer Inc., Redwood City, California 94065, United States.
Giang HoSeer Inc., Redwood City, California 94065, United States.
Ambika SundaresanSeer Inc., Redwood City, California 94065, United States.
Michael A CaldwellProteomics Center of Excellence, Northwestern University, Evanston, Illinois 60208, United States.ORCID 0000-0002-8636-0706
Xiaoyan ZhaoSeer Inc., Redwood City, California 94065, United States.
Ryan BenzSeer Inc., Redwood City, California 94065, United States.
Asim SiddiquiSeer Inc., Redwood City, California 94065, United States.
Neil L KelleherProteomics Center of Excellence, Northwestern University, Evanston, Illinois 60208, United States.ORCID 0000-0002-8815-3372

Funding

TR&D 7: Cell Specific ProteomicsP41GM108569 · NIGMS · NORTHWESTERN UNIVERSITY · PI KELLEHER, NEIL L · 2015 to 2024
$13.6M
NIGMS NIH HHS P41 GM108569
6 · The paper itself

Abstract

The dynamic range challenge for the detection of proteins and their proteoforms in human plasma has been well documented. Here, we use the nanoparticle protein corona approach to enrich low-abundance proteins selectively and reproducibly from human plasma and use top-down proteomics to quantify differential enrichment for the 2841 detected proteoforms from 114 proteins. Furthermore, nanoparticle enrichment allowed top-down detection of proteoforms between ∼1 μg/mL and ∼10 pg/mL in absolute abundance, providing up to a 10

Indexed as

Blood ProteinsNanoparticlesProteomicsHumansProtein CoronaProteomeBlood ProteinsProtein CoronaProteomenanoparticlesplasmaprotein coronaproteoformstop-down proteomics

Identifiers

PMID39312774
PMCPMC11789057

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.