Evidence map›Paper›PMID 39312195›Full record

ArticleCancer research2024

Selective Enhancer Gain-of-Function Deregulates MYC Expression in Multiple Myeloma.

Mahshid Rahmat, Kendell Clement, Jean-Baptiste Alberge, Romanos Sklavenitis-Pistofidis, Rohan Kodgule, Charles P Fulco, Daniel Heilpern-Mallory, Katarina Nilsson, David Dorfman, Jesse M Engreitz and 4 more

Abstract read
In one paragraph

Article in Cancer research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Mahshid RahmatDana-Farber Cancer Institute, Boston, Massachusetts.ORCID 0000-0001-7100-463X
Kendell ClementHarvard Medical School, Boston, Massachusetts.ORCID 0000-0003-3808-0811
Jean-Baptiste AlbergeDana-Farber Cancer Institute, Boston, Massachusetts.ORCID 0000-0002-4218-7294
Romanos Sklavenitis-PistofidisDana-Farber Cancer Institute, Boston, Massachusetts.ORCID 0000-0002-8025-9850
Rohan KodguleDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, Missouri.ORCID 0000-0002-1711-8641
Charles P FulcoBroad Institute of MIT and Harvard, Cambridge, Massachusetts.ORCID 0000-0002-6592-1279
Daniel Heilpern-MalloryDana-Farber Cancer Institute, Boston, Massachusetts.ORCID 0000-0003-4296-015X
Katarina NilssonDepartment of Biochemistry, Northeastern University, Boston, Massachusetts.ORCID 0009-0008-1867-5600
David DorfmanDepartment of Pathology, Brigham and Women's Hospital, Boston, Massachusetts.ORCID 0000-0002-6244-8535
Jesse M EngreitzBroad Institute of MIT and Harvard, Cambridge, Massachusetts.ORCID 0000-0002-5754-1719
Gad GetzHarvard Medical School, Boston, Massachusetts.ORCID 0000-0002-0936-0753
Luca PinelloHarvard Medical School, Boston, Massachusetts.ORCID 0000-0003-1109-3823
Russell J H RyanDepartment of Pathology, University of Michigan, Ann Arbor, Michigan.ORCID 0000-0001-8174-3962
Irene M GhobrialDana-Farber Cancer Institute, Boston, Massachusetts.ORCID 0000-0001-7361-3092

Funding

Molecular Prediction of Myeloma Initiation Molecular Prediction of Myeloma InitiationR35CA263817 · NCI · DANA-FARBER CANCER INST · PI Irene M. Ghobrial · 2022 to 2026
$5.1M
Multiscale exploration of the functional non-coding genomeR35HG010717 · NHGRI · MASSACHUSETTS GENERAL HOSPITAL · PI PINELLO, LUCA · 2019 to 2023
$2.6M
Identifying Functional Drivers of MYC Activation via Developmental Enhancers in Diffuse Large B-cell LymphomaR01CA245059 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RYAN, RUSSELL JAMES HUBBARD · 2020 to 2024
$1.7M
Pan-disease characterization of DNA methylation dysregulationR00HG011658 · NHGRI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI CLEMENT, KENDELL · 2023 to 2025
$747k
Dr. Miriam and Sheldon G. Adelson Medical Research Foundation (AMRF)Helen Gurley Brown FoundationNational Cancer Institute (NCI) R35CA263817NCI NIH HHS R01 CA245059NCI NIH HHS R35 CA263817NHGRI NIH HHS R00 HG011658NHGRI NIH HHS R35 HG010717NIH/NCI R01CA245059Perelman Family Foundation
6 · The paper itself

Abstract

MYC deregulation occurs in the majority of multiple myeloma cases and is associated with progression and worse prognosis. Enhanced MYC expression occurs in about 70% of patients with multiple myeloma, but it is known to be driven by translocation or amplification events in only ∼40% of myelomas. Here, we used CRISPR interference to uncover an epigenetic mechanism of MYC regulation whereby increased accessibility of a plasma cell-type-specific enhancer leads to increased MYC expression. This native enhancer activity was not associated with enhancer hijacking events but led to specific binding of cMAF, IRF4, and SPIB transcription factors that activated MYC expression in the absence of known genetic aberrations. In addition, focal amplification was another mechanism of activation of this enhancer in approximately 3.4% of patients with multiple myeloma. Together, these findings define an epigenetic mechanism of MYC deregulation in multiple myeloma beyond known translocations or amplifications and point to the importance of noncoding regulatory elements and their associated transcription factor networks as drivers of multiple myeloma progression. Significance: The discovery of a native developmental enhancer that sustains the expression of MYC in a subset of myelomas could help identify predictive biomarkers and therapeutic targets to improve the outcomes of patients with multiple myeloma.

Indexed as

Enhancer Elements, GeneticGene Expression Regulation, NeoplasticMultiple MyelomaProto-Oncogene Proteins c-mycCell Line, TumorEpigenesis, GeneticGain of Function MutationHumansInterferon Regulatory Factor-4Interferon Regulatory FactorsInterferon Regulatory Factor-4Interferon Regulatory FactorsMYC protein, humanProto-Oncogene Proteins c-myc

Identifiers

PMID39312195
PMCPMC11649448

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.