Evidence map›Paper›PMID 39312194›Full record

ArticleThe Biochemical journal2024

CDS2 expression regulates de novo phosphatidic acid synthesis.

Daniel M Collins, Vishnu Janardan, David Barneda, Karen E Anderson, Izabella Niewczas, Diane Taylor, Danye Qiu, Henning J Jessen, Andrea F Lopez-Clavijo, Simon Walker and 4 more

Abstract read
In one paragraph

Article in The Biochemical journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Daniel M Collins *Signalling Programme, Babraham Institute, Cambridge CB22 3AT, U.K.
Vishnu Janardan *National Centre for Biological Sciences-TIFR GKVK Campus, Bangalore, India.
David Barneda *Signalling Programme, Babraham Institute, Cambridge CB22 3AT, U.K.
Karen E AndersonSignalling Programme, Babraham Institute, Cambridge CB22 3AT, U.K.
Izabella NiewczasSignalling Programme, Babraham Institute, Cambridge CB22 3AT, U.K.
Diane TaylorSignalling Programme, Babraham Institute, Cambridge CB22 3AT, U.K.
Danye QiuInstitute of Organic Chemistry, University of Freiburg, Albertstr. 21, 79104 Freiburg, Germany.
Henning J JessenInstitute of Organic Chemistry, University of Freiburg, Albertstr. 21, 79104 Freiburg, Germany.
Andrea F Lopez-ClavijoSignalling Programme, Babraham Institute, Cambridge CB22 3AT, U.K.
Simon WalkerSignalling Programme, Babraham Institute, Cambridge CB22 3AT, U.K.
Padinjat RaghuNational Centre for Biological Sciences-TIFR GKVK Campus, Bangalore, India.ORCID 0000-0003-3578-6413
Jonathan ClarkSignalling Programme, Babraham Institute, Cambridge CB22 3AT, U.K.
Len R StephensSignalling Programme, Babraham Institute, Cambridge CB22 3AT, U.K.
Phillip T HawkinsSignalling Programme, Babraham Institute, Cambridge CB22 3AT, U.K.ORCID 0000-0002-6979-0464

Funding

Biotechnology and Biological Sciences Research Council BB/T002530/1Biotechnology and Biological Sciences Research Council BB/Y006925/1
6 · The paper itself

Abstract

CDS enzymes (CDS1 and 2 in mammals) convert phosphatidic acid (PA) to CDP-DG, an essential intermediate in the de novo synthesis of PI. Genetic deletion of CDS2 in primary mouse macrophages resulted in only modest changes in the steady-state levels of major phospholipid species, including PI, but substantial increases in several species of PA, CDP-DG, DG and TG. Stable isotope labelling experiments employing both 13C6- and 13C6D7-glucose revealed loss of CDS2 resulted in a minimal reduction in the rate of de novo PI synthesis but a substantial increase in the rate of de novo PA synthesis from G3P, derived from DHAP via glycolysis. This increased synthesis of PA provides a potential explanation for normal basal PI synthesis in the face of reduced CDS capacity (via increased provision of substrate to CDS1) and increased synthesis of DG and TG (via increased provision of substrate to LIPINs). However, under conditions of sustained GPCR-stimulation of PLC, CDS2-deficient macrophages were unable to maintain enhanced rates of PI synthesis via the 'PI cycle', leading to a substantial loss of PI. CDS2-deficient macrophages also exhibited significant defects in calcium homeostasis which were unrelated to the activation of PLC and thus probably an indirect effect of increased basal PA. These experiments reveal that an important homeostatic response in mammalian cells to a reduction in CDS capacity is increased de novo synthesis of PA, likely related to maintaining normal levels of PI, and provides a new interpretation of previous work describing pleiotropic effects of CDS2 deletion on lipid metabolism/signalling.

Indexed as

MacrophagesPhosphatidic AcidsAnimalsCalciumDiacylglycerol CholinephosphotransferaseMiceMice, Inbred C57BLMice, KnockoutCalciumDiacylglycerol CholinephosphotransferasePhosphatidic AcidsCDP-DGCDS2lipidomicsmetabolismphosphatidic acidsphosphatidylinositol

Identifiers

PMID39312194
PMCPMC11555650

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.