Evidence map›Paper›PMID 39312082›Full record

ArticleMolecular biotechnology2025

Codon Optimization is Required to Express Fluorogenic Reporter Proteins in Lactococcus lactis.

América Selene Gaona-Mendoza, Julio Armando Massange-Sánchez, José Eleazar Barboza-Corona, María Jazmín Abraham-Juárez, Luz Edith Casados-Vázquez

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Article in Molecular biotechnology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

América Selene Gaona-MendozaPosgrado en Biociencias, Universidad de Guanajuato, Campus Irapuato-Salamanca, Carretera Irapuato Silao Km 9, 36500, Irapuato, Guanajuato, Mexico.
Julio Armando Massange-SánchezUnidad de Biotecnología Vegetal, Centro de Investigación y Asistencia en Tecnología y Diseño del Estado de Jalisco A.C. (CIATEJ), 44270, Guadalajara, Mexico.
José Eleazar Barboza-CoronaPosgrado en Biociencias, Universidad de Guanajuato, Campus Irapuato-Salamanca, Carretera Irapuato Silao Km 9, 36500, Irapuato, Guanajuato, Mexico.
María Jazmín Abraham-JuárezUnidad de Genómica Avanzada, Laboratorio Nacional de Genómica Para La Biodiversidad, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, 36821, Guanajuato, Mexico.
Luz Edith Casados-VázquezPosgrado en Biociencias, Universidad de Guanajuato, Campus Irapuato-Salamanca, Carretera Irapuato Silao Km 9, 36500, Irapuato, Guanajuato, Mexico. edith.casados@ugto.mx.ORCID http://orcid.org/0000-0001-8132-5488

Funding

Conahcyt CF-2023-I-1758Universidad de Guanajuato CIIC 021/2023
6 · The paper itself

Abstract

Lactococcus lactis is a Gram-positive bacterium used to produce fermented foods and heterologous proteins. Its Nisin-controlled gene expression system stands out for its versatility and safety. However, the lower GC content in its genome may lead to some limitations in protein production. In this study, we explored the importance and effect of codon optimization on fluorescent reporter protein expression in L. lactis. Three non-optimized fluorescent reporter genes (gfp, rfp, and mcherry) were compared to the codon-optimized variant (mcherry-O). Parameters such as Codon Adaptation Index (CAI), Effective Number of Codons (Enc) and Guanine-Cytosine percentage (% GC) were determined to assess their influence on gene expression and protein synthesis. The production of non-optimized fluorescent proteins does not correlate with their gene expression levels, except for the codon-optimized mCherry-O protein, which was detected in the SDS-PAGE gel and the extracted lysate (visually detected). Expression of the mcherry gene was similar to the mcherry-O gene, but protein was only detected with the optimized gene. The gfp gene showed the highest expression levels, but the quantity of protein was undetectable by SDS-PAGE. The rfp gene was revealed to be an optimized gene but not tailored for L. lactis. These findings underscore the necessity of comprehensive codon optimization for foreign genes in L. lactis and reveal intriguing complexities between expression levels, RNA stability and protein synthesis.

Indexed as

CodonGenes, ReporterLactococcus lactisLuminescent ProteinsBase CompositionGene ExpressionGreen Fluorescent ProteinsProtein BiosynthesisRed Fluorescent ProteinCodonGreen Fluorescent ProteinsLuminescent ProteinsRed Fluorescent ProteinCodon usageFluorescent proteinsGene expressionLactococcus lactis

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.