Evidence map›Paper›PMID 39312004›Full record

ArticleJournal of clinical immunology2024

Biallelic PI4KA Mutations Disrupt B-Cell Metabolism and Cause B-Cell Lymphopenia and Hypogammaglobulinemia.

Francesco Saettini, Fabiola Guerra, Mario Mauri, Claire G Salter, Margaret P Adam, David Adams, Emma L Baple, Estibaliz Barredo, Sanil Bhatia, Arndt Borkhardt and 45 more

Abstract read
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Article in Journal of clinical immunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. A guide to B cell metabolism.Nature reviews. Immunology · 2026
    Review
  2. Article
  3. Review
  4. Article
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  8. Phosphatidylinositol 4-phosphate; A minor lipid with multiple personalities.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2025
    Review
  9. Article
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  12. Observational
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

55 authors.

Francesco SaettiniCentro Tettamanti, Fondazione IRCCS San Gerardo dei Tintori, Monza, Italy. f.saettini@gmail.com.
Fabiola GuerraCentro Tettamanti, Fondazione IRCCS San Gerardo dei Tintori, Monza, Italy.
Mario MauriDipartimento di Medicina e Chirurgia, Università degli Studi Milano-Bicocca, Monza, Italy.
Claire G SalterRILD Wellcome Wolfson Centre, University of Exeter Medical School, Exeter, UK.
Margaret P AdamGenetic Medicine, Department of Pediatrics, University of Washington, Seattle, WA, USA.
David AdamsNIH Undiagnosed Diseases Program, NIH, Bethesda, MD, USA.
Emma L BapleRILD Wellcome Wolfson Centre, University of Exeter Medical School, Exeter, UK.
Estibaliz BarredoNeuropediatric Department, Hospital Universitario Gregorio Marañón, Madrid, Spain.
Sanil BhatiaDepartment of Paediatric Oncology, Haematology and Clinical Immunology, Medical Faculty, Heinrich-Heine University Dusseldorf, Düsseldorf, Germany.
Arndt BorkhardtDepartment of Paediatric Oncology, Haematology and Clinical Immunology, Medical Faculty, Heinrich-Heine University Dusseldorf, Düsseldorf, Germany.
Alfredo BruscoDepartment of Neurosciences Rita Levi-Montalcini, University of Turin, Turin, Italy.
Cristina BugarinCentro Tettamanti, Fondazione IRCCS San Gerardo dei Tintori, Monza, Italy.
Clizia ChinelloDipartimento di Medicina e Chirurgia, Università degli Studi Milano-Bicocca, Monza, Italy.
Andrew H CrosbyRILD Wellcome Wolfson Centre, University of Exeter Medical School, Exeter, UK.
Precilla D'SouzaNIH Undiagnosed Diseases Program, NIH, Bethesda, MD, USA.
Vanna DentiDipartimento di Medicina e Chirurgia, Università degli Studi Milano-Bicocca, Monza, Italy.
Grazia FazioCentro Tettamanti, Fondazione IRCCS San Gerardo dei Tintori, Monza, Italy.
Silvia GiulianiPediatria, Fondazione IRCCS San Gerardo dei Tintori, Monza, Italy.
Hye Sun KuehnImmunology Service, DLM, NIH Clinical Center, Bethesda, MD, USA.
Hassan AmelPediatric Allergy and Immunology Department, Sidra Medicine, Doha, Qatar.
Asha ElmiResearch Branch, Sidra Medicine, Doha, Qatar.
Bernice LoResearch Branch, Sidra Medicine, Doha, Qatar.
Federica MalighettiDipartimento di Medicina e Chirurgia, Università degli Studi Milano-Bicocca, Monza, Italy.
Giorgia MandrileDepartment of Medical Sciences, University of Turin, Turin, Italy.
Andrea Martín-NaldaPediatric Infectious Diseases and Immunodeficiencies Unit, Hospital Universitari Vall d'Hebron, Institut de Recerca Vall d'Hebron, Universitat Autònoma de Barcelona, Barcelona, Spain.
Heather C MeffordGenetic Medicine, Department of Pediatrics, University of Washington, Seattle, WA, USA.
Daniele MorattoFlow Cytometry Laboratory, Diagnostic Department, ASST Spedali Civili di Brescia, Brescia, Italy.
Fatemeh Emam MousaviMolecular Systems Biology, School of Biosciences, Faculty of Health and Medical Sciences, University of Surrey, Guildford, Surrey, United Kingdom.
Zoe NelsonVascular Anomalies Program, Seattle Children's Hospital, Seattle, WA, USA.
Luis González Gutiérrez-SolanaHospital Infantil Niño Jesús, Madrid, Madrid, Spain.
Ellen MacnamaraNIH Undiagnosed Diseases Program, NIH, Bethesda, MD, USA.
Vincent MichaudMolecular Genetics Laboratory, Bordeaux University Hospital, Bordeaux, Aquitaine, France. INSERM U1211, Rare Diseases Laboratory: Genetics and Metabolism, University of Bordeaux, Aquitaine, Talence, France.
Melanie O'LearyCenter for Mendelian Genomics, Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Lisa PaganiDipartimento di Medicina e Chirurgia, Università degli Studi Milano-Bicocca, Monza, Italy.
Lisa PavinatoDepartment of Neurosciences Rita Levi-Montalcini, University of Turin, Turin, Italy.
Patricia VVelez SantamariaNeurometabolic Diseases Laboratory, Bellvitge Biomedical Research Institute (IDIBELL), L'Hospitalet de Llobregat, 08908, Barcelona, Catalonia, Spain.
Laura Planas-SerraNeurometabolic Diseases Laboratory, Bellvitge Biomedical Research Institute (IDIBELL), L'Hospitalet de Llobregat, 08908, Barcelona, Catalonia, Spain.
Manuel QuadriCentro Tettamanti, Fondazione IRCCS San Gerardo dei Tintori, Monza, Italy.
Miquel Raspall-ChaureDepartment of Paediatric Neurology, Hospital Universitari Vall d'Hebron, Barcelona, Spain.
Stefano RebellatoCentro Tettamanti, Fondazione IRCCS San Gerardo dei Tintori, Monza, Italy.
Sergio D RosenzweigImmunology Service, DLM, NIH Clinical Center, Bethesda, MD, USA.
Agathe RoubertieDépartement de Neuropédiatrie, CIC, CHU de Montpellier, INM, Univ Montpellier, INSERM U 1298, Montpellier, France.
Dirk HolzingerDepartment of Pediatric Haematology-Oncology, Pediatrics III, University of Duisburg-Essen, Essen, Germany.
Christin DealDivision of Pediatric Allergy and Immunology, UPMC Children's Hospital of Pittsburgh, Pittsburgh, USA.
Catherine Walsh VockleyDivision of Genetic and Genomic Medicine, UPMC Children's Hospital of Pittsburgh, Pittsburgh, USA.
Angela Maria SavinoDipartimento di Medicina e Chirurgia, Università degli Studi Milano-Bicocca, Monza, Italy.
Jennifer L StoddardImmunology Service, DLM, NIH Clinical Center, Bethesda, MD, USA.
Holm H UhligTranslational Gastroenterology Unit, NIHR Oxford Biomedical Research Centre, John Radcliffe Hospital, University of Oxford, Oxfordshire, UK.
Aurora PujolNeurometabolic Diseases Laboratory, Bellvitge Biomedical Research Institute (IDIBELL), L'Hospitalet de Llobregat, 08908, Barcelona, Catalonia, Spain.
Fulvio MagniDipartimento di Medicina e Chirurgia, Università degli Studi Milano-Bicocca, Monza, Italy.
Giuseppe PagliaDipartimento di Medicina e Chirurgia, Università degli Studi Milano-Bicocca, Monza, Italy.
Gianni CazzanigaDipartimento di Medicina e Chirurgia, Università degli Studi Milano-Bicocca, Monza, Italy.
Rocco PiazzaDipartimento di Medicina e Chirurgia, Università degli Studi Milano-Bicocca, Monza, Italy.
Matteo Barberis *Molecular Systems Biology, School of Biosciences, Faculty of Health and Medical Sciences, University of Surrey, Guildford, Surrey, United Kingdom.
Andrea Biondi *Centro Tettamanti, Fondazione IRCCS San Gerardo dei Tintori, Monza, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposePI4KA-related disorder is a highly clinically variable condition characterized by neurological (limb spasticity, developmental delay, intellectual disability, seizures, ataxia, nystagmus) and gastrointestinal (inflammatory bowel disease and multiple intestinal atresia) manifestations. Although features consistent with immunodeficiency (autoimmunity/autoinflammation and recurrent infections) have been reported in a subset of patients, the burden of B-cell deficiency and hypogammaglobulinemia has not been extensively investigated. We sought to describe the clinical presentation and manifestations of patients with PI4KA-related disorder and to investigate the metabolic consequences of biallelic PI4KA variants in B cells.

methodsClinical data from patients with PI4KA variants were obtained. Multi-omics analyses combining transcriptome, proteome, lipidome and metabolome analyses in conjunction with functional assays were performed in EBV-transformed B cells.

resultsClinical and laboratory data of 13 patients were collected. Recurrent infections (7/13), autoimmune/autoinflammatory manifestations (5/13), B-cell deficiency (8/13) and hypogammaglobulinemia (8/13) were frequently observed. Patients' B cells frequently showed increased transitional and decreased switched memory B-cell subsets. Pathway analyses based on differentially expressed transcripts and proteins confirmed the central role of PI4KA in B cell differentiation with altered B-cell receptor (BCR) complex and signalling. By altering lipids production and tricarboxylic acid cycle regulation, and causing increased endoplasmic reticulum stress, biallelic PI4KA mutations disrupt B cell metabolism inducing mitochondrial dysfunction. As a result, B cells show hyperactive PI3K/mTOR pathway, increased autophagy and deranged cytoskeleton organization.

conclusionBy altering lipid metabolism and TCA cycle, impairing mitochondrial activity, hyperactivating mTOR pathway and increasing autophagy, PI4KA-related disorder causes a syndromic inborn error of immunity presenting with B-cell deficiency and hypogammaglobulinemia.

Indexed as

AgammaglobulinemiaB-LymphocytesMutationAdolescentAllelesChildChild, PreschoolFemaleHumansInfantMaleSignal TransductionTOR Serine-Threonine KinasesTOR Serine-Threonine KinasesHypogammaglobulinemiaInborn error of immunityPI4KASyndromic immunodeficiency

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.