Evidence map›Paper›PMID 39310090›Full record

ArticleVirus evolution2024

The classification, origin, and evolutionary dynamics of severe fever with thrombocytopenia syndrome virus circulating in East Asia.

Shaowei Sang, Peng Chen, Chuanxi Li, Anran Zhang, Yiguan Wang, Qiyong Liu

Abstract read
In one paragraph

Article in Virus evolution, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Shaowei SangClinical Epidemiology Unit, Qilu Hospital of Shandong University, No. 107 Wenhua Road, Lixia District, Jinan 250012, People's Republic of China.ORCID https://orcid.org/0000-0002-5861-1096
Peng ChenDepartment of Healthcare-associated Infection Management, School and Hospital of Stomatology, Shandong University, No. 44-1 Wenhua Road, Lixia District, Jinan 250012, People's Republic of China.
Chuanxi LiClinical Epidemiology Unit, Qilu Hospital of Shandong University, No. 107 Wenhua Road, Lixia District, Jinan 250012, People's Republic of China.
Anran ZhangClinical Epidemiology Unit, Qilu Hospital of Shandong University, No. 107 Wenhua Road, Lixia District, Jinan 250012, People's Republic of China.
Yiguan WangCAS Key Laboratory of Insect Developmental and Evolutionary Biology, CAS Center for Excellence in Molecular Plant Sciences, No. 300 Fenglin Road, Xuhui District, Shanghai 200032, People's Republic of China.
Qiyong LiuNational Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, WHO Collaborating Centre for Vector Surveillance and Management, No. 55 Changbai Road, Changping District, Beijing 102206, People's Republic of China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The classification of severe fever with thrombocytopenia syndrome virus (SFTSV) lacked consistency due to limited virus sequences used across previous studies, and the origin and transmission dynamics of the SFTSV remains not fully understood. In this study, we analyzed the diversity and phylodynamics of SFTSV using the most comprehensive and largest dataset publicly available for a better understanding of SFTSV classification and transmission. A total of 1267 L segments, 1289 M segments, and 1438 S segments collected from China, South Korea, and Japan were included in this study. Maximum likelihood trees were reconstructed to classify the lineages. Discrete phylogeographic analysis was conducted to infer the phylodynamics of SFTSV. We found that the L, M, and S segments were highly conserved, with mean pairwise nucleotide distances of 2.80, 3.36, and 3.35% and could be separated into 16, 13, and 15 lineages, respectively. The evolutionary rate for L, M, and the S segment was 0.61 × 10

Indexed as

diversityoriginphylodynamicsselective pressuresevere fever with thrombocytopenia syndrome

Identifiers

PMID39310090
PMCPMC11416872

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.