Evidence map›Paper›PMID 39305905›Full record

ArticleDevelopmental cell2024

DRMY1 promotes robust morphogenesis in Arabidopsis by sustaining the translation of cytokinin-signaling inhibitor proteins.

Shuyao Kong, Mingyuan Zhu, M Regina Scarpin, David Pan, Longfei Jia, Ryan E Martinez, Simon Alamos, Batthula Vijaya Lakshmi Vadde, Hernan G Garcia, Shu-Bing Qian and 2 more

Abstract read
In one paragraph

Article in Developmental cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Brassinosteroids mediate proper coordination of sepal elongation.bioRxiv : the preprint server for biology · 2025
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Shuyao KongWeill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853, USA; Section of Plant Biology, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA.
Mingyuan ZhuWeill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853, USA; Section of Plant Biology, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA.
M Regina ScarpinLaboratory of Genetics, University of Wisconsin, Madison, WI 53706, USA.
David PanWeill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853, USA; Section of Plant Biology, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA.
Longfei JiaDivision of Nutritional Sciences, Cornell University, Ithaca, NY 14853, USA.
Ryan E MartinezLaboratory of Genetics, University of Wisconsin, Madison, WI 53706, USA.
Simon AlamosEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; Feedstocks Division, Joint BioEnergy Institute, Emeryville, CA 94608, USA; Department of Plant and Microbial Biology, University of California at Berkeley, Berkeley, CA 94720, USA.
Batthula Vijaya Lakshmi VaddeWeill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853, USA; Section of Plant Biology, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA.
Hernan G GarciaBiophysics Graduate Group, University of California at Berkeley, Berkeley, CA 94720, USA; Department of Physics, University of California at Berkeley, Berkeley, CA 94720, USA; Institute for Quantitative Biosciences-QB3, University of California at Berkeley, Berkeley, CA 94720, USA; Department of Molecular and Cell Biology, University of California at Berkeley, Berkeley, CA 94720, USA; Chan Zuckerberg Biohub, San Francisco, San Francisco, CA 94158, USA.
Shu-Bing QianDivision of Nutritional Sciences, Cornell University, Ithaca, NY 14853, USA.
Jacob O BrunkardLaboratory of Genetics, University of Wisconsin, Madison, WI 53706, USA.
Adrienne H K RoederWeill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853, USA; Section of Plant Biology, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA. Electronic address: ahr75@cornell.edu.

Funding

National Metabolomics Data Repository - nextgen Metabolomics WorkbenchU2CDK119886 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUBRAMANIAM, SHANKAR · 2018 to 2021
$12.7M
Biomedical Data Commons Workbench (BDCW)OT2OD030544 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUBRAMANIAM, SHANKAR · 2020 to 2024
$3.2M
A tRNA synthetase is an amino acid sensor for TOR in plantsR01GM145814 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI Jacob O Brunkard · 2022 to 2026
$1.8M
An aminoacyl tRNA synthetase is a nitrogen sensor that activates TOR in plantsDP5OD023072 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI BRUNKARD, JACOB O · 2016 to 2020
$1.6M
Mechanisms of robustness in organogenesis (Equipment Supplement 2023)R01GM134037 · NIGMS · CORNELL UNIVERSITY · PI ROEDER, ADRIENNE H · 2020 to 2023
$1.5M
Predictive understanding of the temporal control of transcription in Drosophila developmentR01GM139913 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI GARCIA, HERNAN GUSTAVO · 2021 to 2024
$1.2M
Acquisition of a Hybrid Quadrupole Time of Flight LC-MS/MS System for the CornellS10OD017992 · OD · CORNELL UNIVERSITY · PI ZHANG, SHENG · 2014 to 2014
$600k
NIDDK NIH HHS U2C DK119886NIGMS NIH HHS R01 GM134037NIGMS NIH HHS R01 GM139913NIGMS NIH HHS R01 GM145814NIH HHS DP2 OD024541NIH HHS DP5 OD023072NIH HHS OT2 OD030544NIH HHS S10 OD017992
6 · The paper itself

Abstract

Robustness is the invariant development of phenotype despite environmental changes and genetic perturbations. In the Arabidopsis flower bud, four sepals robustly initiate and grow to a constant size to enclose and protect the inner floral organs. We previously characterized the mutant development-related myb-like 1 (drmy1), where 3-5 sepals initiate variably and grow to different sizes, compromising their protective function. The molecular mechanism underlying this loss of robustness was unclear. Here, we show that drmy1 has reduced TARGET OF RAPAMYCIN (TOR) activity, ribosomal content, and translation. Translation reduction decreases the protein level of ARABIDOPSIS RESPONSE REGULATOR7 (ARR7) and ARABIDOPSIS HISTIDINE PHOSPHOTRANSFER PROTEIN 6 (AHP6), two cytokinin-signaling inhibitors that are normally rapidly produced before sepal initiation. The resultant upregulation of cytokinin signaling disrupts robust auxin patterning and sepal initiation. Our work shows that the homeostasis of translation, a ubiquitous cellular process, is crucial for the robust spatiotemporal patterning of organogenesis.

Indexed as

ArabidopsisArabidopsis ProteinsCytokininsFlowersGene Expression Regulation, PlantSignal TransductionTranscription FactorsDNA-Binding ProteinsIndoleacetic AcidsMorphogenesisPhosphatidylinositol 3-KinasesProtein BiosynthesisTOR Serine-Threonine KinasesAHP6 protein, ArabidopsisArabidopsis ProteinsARR7 protein, ArabidopsisCytokininsDNA-Binding ProteinsIndoleacetic AcidsPhosphatidylinositol 3-KinasesTOR protein, ArabidopsisTOR Serine-Threonine KinasesTranscription FactorsAHP6ArabidopsisauxincytokininmorphogenesisribosomopathyrobustnesssepalTORtranslation

Identifiers

PMID39305905
PMCPMC11614703

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.