Complete genome sequence of lima bean endornavirus 1: a putative new member of the genus Alphaendornavirus (family Endornaviridae).

Nina Aboughanem-Sabanadzovic, Rodrigo A Valverde, Sead Sabanadzovic

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Article in Archives of virology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

3 authors.

Nina Aboughanem-SabanadzovicInstitute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, USA. nja62@msstate.edu.ORCID http://orcid.org/0000-0002-6141-3218

Rodrigo A ValverdeDepartment of Plant Pathology and Crop Physiology, Louisiana State University, Baton Rouge, USA.

Sead SabanadzovicInstitute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, USA.ORCID http://orcid.org/0000-0002-2995-2633

Funding

USDA-NIFA HATCH 7006130USDA-NIFA HATCH 7006131

6 · The paper itself

Abstract

In this study, we completely sequenced the genome of a new member of the genus Alphaendornavirus, family Endornaviridae, from lima bean (Phaseolus lunatus), for which we propose the name "lima bean endornavirus 1" (LbEV1). The complete genome of LbEV1 consists of 15,265 nucleotides, including a stretch of 12 cytosine residues at its 3' end, and contains a long single open reading frame (ORF) coding for a 4980-aa-long polyprotein. Analysis of the polyprotein sequence revealed the presence of four conserved functional domains (in order from the N- to C-terminus): viral helicase 1, peptidase _C97, glycosyltransferase_GTB-type, and viral RNA-dependent RNA polymerase (RdRP). The LbEV1 polyprotein showed the highest amino acid sequence similarity (63% identity and 98% coverage) to Phaseolus vulgaris endornavirus 3 (PvEV3) and also showed 42% identity (95% coverage) to Geranium carolinianum endornavirus. Phylogenetic analysis based on the viral RdRp domain showed that LbEV1 belongs to a subclade within the genus Alphaendornavirus that includes three other viruses infecting plants of the genus Phaseolus.

Indexed as

Genome, ViralOpen Reading FramesPhaseolusPhylogenyRNA, ViralRNA VirusesAmino Acid SequenceBase SequencePlant DiseasesPolyproteinsRNA-Dependent RNA PolymeraseViral ProteinsWhole Genome SequencingPolyproteinsRNA-Dependent RNA PolymeraseRNA, ViralViral Proteins

Identifiers

PMID39305367

DOI10.3390/v13061153

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.