Evidence map›Paper›PMID 39304820›Full record

ArticleBMC genomics2024

Unveiling the Brazilian kefir microbiome: discovery of a novel Lactobacillus kefiranofaciens (LkefirU) genome and in silico prospection of bioactive peptides with potential anti-Alzheimer properties.

Matheus H Silva, Letícia L Batista, Serena M Malta, Ana C C Santos, Ana P Mendes-Silva, Ana M Bonetti, Carlos Ueira-Vieira, Anderson R Dos Santos

Abstract read
In one paragraph

Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Matheus H SilvaInstitute of Biotechnology, Federal University of Uberlandia, Minas Gerais, Brazil. matheushenrisi@hotmail.com.
Letícia L BatistaJohannes Gutenberg University, Mainz, Germany.
Serena M MaltaInstitute of Biotechnology, Federal University of Uberlandia, Minas Gerais, Brazil.
Ana C C SantosInstitute of Biotechnology, Federal University of Uberlandia, Minas Gerais, Brazil.
Ana P Mendes-SilvaDepartment of Psychiatry, University of Saskatchewan, Saskatoon, SK, Canada.
Ana M BonettiInstitute of Biotechnology, Federal University of Uberlandia, Minas Gerais, Brazil.
Carlos Ueira-VieiraInstitute of Biotechnology, Federal University of Uberlandia, Minas Gerais, Brazil. ueira@ufu.br.
Anderson R Dos SantosFaculty of Computer Science, Federal University of Uberlandia, Minas Gerais, Brazil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundKefir is a complex microbial community that plays a critical role in the fermentation and production of bioactive peptides, and has health-improving properties. The composition of kefir can vary by geographic localization and weather, and this paper focuses on a Brazilian sample and continues previous work that has successful anti-Alzheimer properties. In this study, we employed shotgun metagenomics and peptidomics approaches to characterize Brazilian kefir further.

resultsWe successfully assembled the novel genome of Lactobacillus kefiranofaciens (LkefirU) and conducted a comprehensive pangenome analysis to compare it with other strains. Furthermore, we performed a peptidome analysis, revealing the presence of bioactive peptides encrypted by L. kefiranofaciens in the Brazilian kefir sample, and utilized in silico prospecting and molecular docking techniques to identify potential anti-Alzheimer peptides, targeting β-amyloid (fibril and plaque), BACE, and acetylcholinesterase. Through this analysis, we identified two peptides that show promise as compounds with anti-Alzheimer properties.

conclusionsThese findings not only provide insights into the genome of L. kefiranofaciens but also serve as a promising prototype for the development of novel anti-Alzheimer compounds derived from Brazilian kefir.

Indexed as

Alzheimer DiseaseGenome, BacterialKefirLactobacillusMicrobiotaPeptidesAmyloid beta-PeptidesAmyloid Precursor Protein SecretasesAspartic Acid EndopeptidasesBrazilHumansMetagenomicsMolecular Docking SimulationAmyloid beta-PeptidesAmyloid Precursor Protein SecretasesAspartic Acid EndopeptidasesBACE1 protein, humanPeptidesAlzheimer’s diseaseKefirLactobacillus kefiranofaciensMetagenomeNext Generation DNA SequencingPeptidome

Identifiers

PMID39304820
PMCPMC11414172

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.