Evidence map›Paper›PMID 39304809›Full record

ArticleBMC infectious diseases2024

Evaluation of molecular and bacteriological detection methods performed on the formalin-fixed paraffin-embedded biopsy samples collected from endometrial and lymph node tuberculosis suspected patients.

Negash Baye, Abay Atnafu, Selfu Girma, Yerega Belete, Sofia Yimam, Betelehem Getachew, Sosina Ayalew, Kidist Bobosha, Zewditu Chanyalew, Addisu Gize and 1 more

Abstract readEvaluation Study
In one paragraph

Article in BMC infectious diseases, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Clinical Value of Negative-Pressure Endometrial Sampling Technique in Screening Endometrial Tuberculosis.Medical science monitor : international medical journal of experimental and clinical research · 2025
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Negash BayeArmauer Hansen Research Institute, Addis Ababa, Ethiopia. negila83@gmail.com.
Abay Atnafu *Armauer Hansen Research Institute, Addis Ababa, Ethiopia.
Selfu Girma *Armauer Hansen Research Institute, Addis Ababa, Ethiopia.
Yerega BeleteDepartment of Microbiology, Immunology and Parasitology, St. Paul's Hospital Millennium Medical College, Addis Ababa, Ethiopia.
Sofia YimamArmauer Hansen Research Institute, Addis Ababa, Ethiopia.
Betelehem GetachewArmauer Hansen Research Institute, Addis Ababa, Ethiopia.
Sosina AyalewArmauer Hansen Research Institute, Addis Ababa, Ethiopia.
Kidist BoboshaArmauer Hansen Research Institute, Addis Ababa, Ethiopia.
Zewditu ChanyalewDepartment of Pathology, St. Paul's Hospital Millennium Medical College, Addis Ababa, Ethiopia.
Addisu Gize *Armauer Hansen Research Institute, Addis Ababa, Ethiopia.
Meberework Chaniyalew *Armauer Hansen Research Institute, Addis Ababa, Ethiopia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundEndometrial Tuberculosis is one of the most common gynecological problems known to have serious implications for the quality of life like infertility. The commonly practiced histopathology solely relies on the suggestive feature of Tuberculosis (TB) with low specificity. Regarding the alternative bacteriological and molecular detection tools, little evidence was generated on their utility in the diagnosis of endometrial tuberculosis in Ethiopia. Therefore, we aim to investigate the detection rate of molecular and bacteriological detection methods on formalin-fixed paraffin-embedded biopsy samples for the diagnosis of endometrial and lymph node TB.

methodsA retrospective cross-sectional study was conducted on 90 formalin fixed paraffin embedded biopsy samples from patients with gynecologic and lymph problems collected between 2018 and 2022 at St. Paul's Hospital Millennium Medical College, Addis Ababa, Ethiopia. SPSS version 26 was used for statistical analysis. The diagnostic performance was calculated using the histopathology method as the reference standard. Cohen's Kappa value was used to measure the level of agreement. A test with a P-value of < 0.05 was considered statistically significant.

resultsA total of 90 samples were analyzed in the current study. Auramine O, GeneXpert MTB/RIF assay, and Real-Time PCR tests have shown a detection rate of 32/90 (36%), 43/90 (47.8%), and 54/90 (60%) respectively (P ≤ 0.01). The sensitivity and specificity of AO were 38.1% and 95% respectively. RT PCR showed superior sensitivity followed by GeneXpert MTB/RIF assay, 70% and 58.6%. AO and molecular methods have shown a similarly low level of agreement with histopathology (Kappa value = 0.2).

conclusionsIn a resource-limited setting, the selection of diagnostic tools needs careful attention. Putting the patients on anti-TB treatments based solely on histopathological findings may lead to undesired and adverse complications. Therefore, applying molecular and bacteriological detection methods along with histopathology, could help minimize inappropriate antimicrobial use.

Indexed as

EndometriumMycobacterium tuberculosisParaffin EmbeddingSensitivity and SpecificityTuberculosis, Lymph NodeAdolescentAdultBiopsyCross-Sectional StudiesEthiopiaFemaleFormaldehydeHumansLymph NodesMiddle AgedMolecular Diagnostic TechniquesFormaldehydeAuramine OEndometrial TBGeneXpert MTB/RIF assayRT PCR

Identifiers

PMID39304809
PMCPMC11414049

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.