Evidence map›Paper›PMID 39304764›Full record

ArticleNature structural & molecular biology2025

Cryo-EM structures of the Spo11 core complex bound to DNA.

You Yu, Juncheng Wang, Kaixian Liu, Zhi Zheng, Meret Arter, Corentin Claeys Bouuaert, Stephen Pu, Dinshaw J Patel, Scott Keeney

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Controlling Meiotic Double-Strand Break Formation in Mice: A Web of Multivalent Protein-Protein Interactions.BioEssays : news and reviews in molecular, cellular and developmental biology · 2026
    Review
  2. Article
  3. Multifaceted and evolutionarily dynamic interactions betweenbioRxiv : the preprint server for biology · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Dimerization of thebioRxiv : the preprint server for biology · 2026
    Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Reconstitution of SPO11-dependent double-strand break formation.bioRxiv : the preprint server for biology · 2024
    Article
  15. Article
  16. The molecular machinery of meiotic recombination.Biochemical Society transactions · 2024
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

You Yu *Structural Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Juncheng Wang *Structural Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Kaixian Liu *Molecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID http://orcid.org/0000-0001-9711-6509
Zhi Zheng *Molecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Meret ArterMolecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Corentin Claeys BouuaertMolecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID http://orcid.org/0000-0001-5801-7313
Stephen PuMolecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Dinshaw J PatelStructural Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA. pateld@mskcc.org.ORCID http://orcid.org/0000-0002-9779-7778
Scott KeeneyMolecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA. s-keeney@ski.mskcc.org.ORCID http://orcid.org/0000-0002-1283-6417

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
Mechanism and regulation of meiotic recombinationR35GM118092 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI Scott Keeney · 2016 to 2026
$7.0M
Structural and functional principles underlying germline genome transmissionR01HD110120 · NICHD · SLOAN-KETTERING INST CAN RESEARCH · PI Scott Keeney, DINSHAW J PATEL · 2022 to 2026
$2.4M
NCI NIH HHS P30 CA008748NICHD NIH HHS R01 HD110120NIGMS NIH HHS R35 GM118092
6 · The paper itself

Abstract

DNA double-strand breaks that initiate meiotic recombination are formed by the topoisomerase-relative enzyme Spo11, supported by conserved auxiliary factors. Because high-resolution structural data have not been available, many questions remain about the architecture of Spo11 and its partners and how they engage with DNA. We report cryo-electron microscopy structures at up to 3.3-Å resolution of DNA-bound core complexes of Saccharomyces cerevisiae Spo11 with Rec102, Rec104 and Ski8. In these structures, monomeric core complexes make extensive contacts with the DNA backbone and with the recessed 3'-OH and first 5' overhanging nucleotide, establishing the molecular determinants of DNA end-binding specificity and providing insight into DNA cleavage preferences in vivo. The structures of individual subunits and their interfaces, supported by functional data in yeast, provide insight into the role of metal ions in DNA binding and uncover unexpected structural variation in homologs of the Top6BL component of the core complex.

Indexed as

DNADNA, FungalEndodeoxyribonucleasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCryoelectron MicroscopyDNA-Binding ProteinsMeiotic Recombination Protein SPO11Models, MolecularProtein BindingProtein ConformationDNADNA-Binding ProteinsDNA, FungalEndodeoxyribonucleasesMeiotic Recombination Protein SPO11Saccharomyces cerevisiae ProteinsSpo11 protein, S cerevisiae

Identifiers

PMID39304764
PMCPMC11746154

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.