Evidence map›Paper›PMID 39304666›Full record

ArticleScientific data2024

Chromosome-level genome assembly of Tritrichomonas foetus, the causative agent of Bovine Trichomonosis.

Mostafa Y Abdel-Glil, Johannes Solle, Daniel Wibberg, Heinrich Neubauer, Lisa D Sprague

Abstract readDataset
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. A Multi-Omics Perspective onInternational journal of molecular sciences · 2025
    Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Mostafa Y Abdel-GlilFriedrich-Loeffler-Institut, Institut für Bakterielle Infektionen und Zoonosen (IBIZ), Naumburger Str. 96a, 07743, Jena, Germany. mostafa.abdelglil@fli.de.ORCID 0000-0003-2068-6081
Johannes SolleFriedrich-Loeffler-Institut, Institut für Bakterielle Infektionen und Zoonosen (IBIZ), Naumburger Str. 96a, 07743, Jena, Germany.
Daniel WibbergCenter for Biotechnology - CeBiTec, Bielefeld University, Universitätsstraße 27, D-33615, Bielefeld, Germany.
Heinrich NeubauerFriedrich-Loeffler-Institut, Institut für Bakterielle Infektionen und Zoonosen (IBIZ), Naumburger Str. 96a, 07743, Jena, Germany.
Lisa D SpragueFriedrich-Loeffler-Institut, Institut für Bakterielle Infektionen und Zoonosen (IBIZ), Naumburger Str. 96a, 07743, Jena, Germany. lisa.sprague@fli.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tritrichomonas foetus is a parasitic protist responsible for bovine trichomonosis, a reproductive disease associated with significant economic burden to the livestock industry throughout the world. Here, we present a chromosome-level reference genome of T. foetus -KV-1 (ATCC 30924) using short-read (Illumina Miseq), long-read (Oxford Nanopore) and chromatin-linked (Hi-C) sequencing. This is the first chromosome-level genome of a parasitic protist of the order Tritrichomonadida and the second within the Parabasalia lineage, after Trichomonas vaginalis, the human-associated causative agent of the sexually transmitted infection in humans. Our constructed genome is 148 Mb in size, with a N50 length of the scaffolds of 22.9 Mb. The contigs are anchored in five super-scaffolds, corresponding to the expected five chromosomes of the species and covering 78% of the genome assembly. We predict 41,341 protein-coding genes, of which 95.10% have been functionally annotated. This high-quality genome assembly serves as a valuable reference genome for T. foetus to support future studies in functional genomics, genetic conservation and taxonomy.

Indexed as

Cattle DiseasesGenome, ProtozoanTritrichomonas foetusAnimalsCattleChromosomesProtozoan Infections, Animal

Identifiers

PMID39304666
PMCPMC11415386

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.