Evidence map›Paper›PMID 39302509›Full record

ArticlePlant molecular biology2024

PAP1 and PAP7 are required for association of plastid-encoded RNA polymerase with DNA.

Joyful Wang, V Miguel Palomar, Ji-Hee Min, Andrzej T Wierzbicki

Abstract read
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Joyful WangDepartment of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, MI, 48109, USA.
V Miguel PalomarDepartment of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, MI, 48109, USA.ORCID http://orcid.org/0000-0003-4009-7030
Ji-Hee MinDepartment of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, MI, 48109, USA.
Andrzej T WierzbickiDepartment of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, MI, 48109, USA. wierzbic@umich.edu.ORCID http://orcid.org/0000-0002-5713-1306

Funding

Directorate for Biological Sciences MCB 1934703UNAM-PAPIIT IA203424
6 · The paper itself

Abstract

Plastid-encoded RNA polymerase (PEP) is a bacterial-type multisubunit RNA polymerase responsible for the majority of transcription in chloroplasts. PEP consists of four core subunits, which are orthologs of their cyanobacterial counterparts. In Arabidopsis thaliana, PEP is expected to interact with 14 PEP-associated proteins (PAPs), which serve as peripheral subunits of the RNA polymerase. The exact contributions of PAPs to PEP function are still poorly understood. We used ptChIP-seq to show that PAP1 (also known as pTAC3), a peripheral subunit of PEP, binds to the same genomic loci as RpoB, a core subunit of PEP. The pap1 mutant shows a complete loss of RpoB binding to DNA throughout the genome, indicating that PAP1 is necessary for RpoB binding to DNA. A similar loss of RpoB binding to DNA is observed in a mutant defective in PAP7 (also known as pTAC14), another peripheral PEP subunit. We propose that PAPs are required for the recruitment of core PEP subunits to DNA.

Indexed as

ArabidopsisArabidopsis ProteinsDNA-Directed RNA PolymerasesChloroplastsDNA, PlantGene Expression Regulation, PlantMutationPlastidsProtein BindingArabidopsis ProteinsDNA-Directed RNA PolymerasesDNA, PlantArabidopsis thalianaChloroplastRNA polymeraseTranscription

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.