Evidence map›Paper›PMID 39301107›Full record

ArticleOpen forum infectious diseases2024

The Impact of GeneXpert Cerebrospinal Fluid Testing on Tuberculous Meningitis Diagnosis in Routine Care in Botswana.

James Milburn, Ookeditse Ntwayagae, Kebatshabile Ngoni, Rachita Suresh, Neo Lemme, Cassie Northcott, James Penney, Matthew Kinsella, Imogen Mechie, Samuel Ensor and 10 more

Abstract read
In one paragraph

Article in Open forum infectious diseases, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

James MilburnBotswana Harvard Health Partnership, Gaborone, Botswana.ORCID https://orcid.org/0000-0001-9885-6103
Ookeditse NtwayagaeBotswana University of Maryland School of Medicine Health Initiative (BUMMHI), Gaborone, Botswana.
Kebatshabile NgoniBotswana Harvard Health Partnership, Gaborone, Botswana.
Rachita SureshBotswana Harvard Health Partnership, Gaborone, Botswana.
Neo LemmeNational Health Laboratory, Ministry of Health and Wellness, Gaborone, Botswana.
Cassie NorthcottBotswana Harvard Health Partnership, Gaborone, Botswana.
James PenneyBotswana Harvard Health Partnership, Gaborone, Botswana.
Matthew KinsellaBotswana Harvard Health Partnership, Gaborone, Botswana.
Imogen MechieBotswana Harvard Health Partnership, Gaborone, Botswana.
Samuel EnsorBotswana Harvard Health Partnership, Gaborone, Botswana.
Tony ChebaniMinistry of Health and Wellness, Gaborone, Botswana.
Daniel GrintDepartment of Infectious Disease Epidemiology and International Health, Faculty of Epidemiology and Population Health, London School of Hygiene and Tropical Medicine, London, UK.ORCID https://orcid.org/0000-0001-8001-6544
Mark W TenfordeBotswana-UPenn Partnership, Gaborone, Botswana.
Ava AvalosBotswana Harvard Health Partnership, Gaborone, Botswana.
Dinah RamaabyaMinistry of Health and Wellness, Gaborone, Botswana.
Ronan DoyleDepartment of Clinical Research, Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London, UK.
Margaret MokomaneSchool of Allied Health Professions, University of Botswana, Gaborone, Botswana.
Madisa MineNational Health Laboratory, Ministry of Health and Wellness, Gaborone, Botswana.
Katharina KranzerDepartment of Clinical Research, Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London, UK.ORCID https://orcid.org/0000-0001-5691-7270
Joseph N JarvisBotswana Harvard Health Partnership, Gaborone, Botswana.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Tuberculous meningitis (TBM) disproportionately impacts high-HIV prevalence, resource-limited settings where diagnosis is challenging. The GeneXpert platform has utility in TBM diagnosis, but uptake remains limited. In Botswana, before the introduction of GeneXpert, tuberculosis (TB) testing was only available through mycobacterial culture at the National TB Reference Laboratory. Data describing routine use of Xpert MTB/RIF for cerebrospinal fluid (CSF) testing in resource-limited settings are scarce. Methods: Electronic records for patients with CSF tested in government facilities in Botswana between 2016 and 2022 were obtained from a central online repository as part of ongoing national meningitis surveillance. Samples were excluded from 1 site where Xpert MTB/RIF is performed universally. The proportion receiving TB-specific investigation on CSF and the number positive for Results: The proportion of CSF samples receiving TB-specific investigation increased from 4.5% (58/1288) in 2016 to 29.0% (201/693) in 2022, primarily due to increased analysis with Xpert MTB/RIF from 0.9% (11/1288) to 23.2% (161/693). There was an overall decline in the annual number of CSF samples analyzed, but the proportion with microbiologically confirmed TBM increased from 0.4% to 1.2%. The proportion of samples tested for TB that were collected from health care facilities >100 km from the National TB Reference Laboratory increased with Xpert MTB/RIF rollout from 65.9% (87/132) to 78.0% (494/633). Conclusions: In Botswana, access to TB culture is challenging in remote populations; more accessible near-patient testing using Xpert MTB/RIF increased the number of patients receiving TB-specific testing on CSF and the number of confirmed TBM cases.

Indexed as

TB meningitisUltraXpert MTB/RIF

Identifiers

PMID39301107
PMCPMC11412236

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.