Evidence map›Paper›PMID 39300649›Full record

ArticleMethods in enzymology2024

Expression, purification, and biochemical characterization of micro- and macroalgal kainoid synthases.

Austin R Hopiavuori, Radcliff T Huffman, Shaun M K McKinnie

Abstract read
In one paragraph

Article in Methods in enzymology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Austin R HopiavuoriDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA, United States.
Radcliff T HuffmanDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA, United States.
Shaun M K McKinnieDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA, United States. Electronic address: smckinnie@ucsc.edu.

Funding

UCSC IMSDT32GM135742 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI Melissa S Jurica · 2020 to 2026
$2.7M
Development of a high throughput platform for screening directed evolution librariesR21GM148870 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI SANCHEZ, LAURA MARGARET · 2023 to 2024
$430k
NIGMS NIH HHS R21 GM148870NIGMS NIH HHS T32 GM135742
6 · The paper itself

Abstract

Kainoid natural products are a series of potent ionotropic glutamate receptor agonists produced by a variety of divergent marine micro- and macro-algae. The key biosynthetic step in the construction of the pyrrolidine ring pharmacophore involves a unique branch of non-heme iron α-ketoglutarate dependent dioxygenases (Fe/αKGs) termed the kainoid synthases. These Fe/αKG homologs catalyze a stereoselective C-H abstraction followed by a radical carbon-carbon bond reaction to form the bioactive core on N-prenylated L-glutamic acid substrates. In this article, we describe the expression, purification, and biochemical characterization of four divergent kainoid synthases (DabC, RadC1, DsKabC, GfKabC). Furthermore, we compare and contrast their substrate preferences and product distributions, and provide some preliminary insight into how to repurpose these enzymes for whole cell biocatalysis.

Indexed as

Recombinant ProteinsCloning, MolecularGene ExpressionSubstrate SpecificityRecombinant ProteinsAlgaeAmino acidsBiocatalysisCyclizationDioxygenaseIronMarineNatural productsNeurotoxinNeurotransmitter

Identifiers

PMID39300649
PMCPMC12088602

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.