Evidence map›Paper›PMID 39300311›Full record

ArticleNature cell biology2024

Fasting shapes chromatin architecture through an mTOR/RNA Pol I axis.

Nada Al-Refaie, Francesco Padovani, Johanna Hornung, Lorenz Pudelko, Francesca Binando, Andrea Del Carmen Fabregat, Qiuxia Zhao, Benjamin D Towbin, Elif Sarinay Cenik, Nicholas Stroustrup and 3 more

Abstract read
In one paragraph

Article in Nature cell biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. An atlas of thebioRxiv : the preprint server for biology · 2026
    Article
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  10. Review
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  12. microPublication biology · 2026
    Article
  13. Article
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  16. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Nada Al-RefaieInstitute of Functional Epigenetics, Helmholtz Zentrum München, Neuherberg, Germany.
Francesco PadovaniInstitute of Functional Epigenetics, Helmholtz Zentrum München, Neuherberg, Germany.
Johanna HornungInstitute of Functional Epigenetics, Helmholtz Zentrum München, Neuherberg, Germany.
Lorenz PudelkoInstitute of Functional Epigenetics, Helmholtz Zentrum München, Neuherberg, Germany.
Francesca BinandoInstitute of Functional Epigenetics, Helmholtz Zentrum München, Neuherberg, Germany.
Andrea Del Carmen FabregatCentre for Genomic Regulation, The Barcelona Institute of Science and Technology, Barcelona, Spain.
Qiuxia ZhaoDepartment of Molecular Biosciences, University of Texas Austin, Austin, TX, USA.ORCID 0000-0001-9981-268X
Benjamin D TowbinUniversity of Bern, Bern, Switzerland.ORCID 0000-0001-7046-1257
Elif Sarinay CenikDepartment of Molecular Biosciences, University of Texas Austin, Austin, TX, USA.
Nicholas StroustrupCentre for Genomic Regulation, The Barcelona Institute of Science and Technology, Barcelona, Spain.ORCID 0000-0001-9530-7301
Jan PadekenInstitute of Molecular Biology, Mainz, Germany.
Kurt M SchmollerInstitute of Functional Epigenetics, Helmholtz Zentrum München, Neuherberg, Germany.ORCID 0000-0001-5790-5204
Daphne S CabiancaInstitute of Functional Epigenetics, Helmholtz Zentrum München, Neuherberg, Germany. daphne.cabianca@helmholtz-munich.de.ORCID 0000-0002-1834-7868

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Role of Nucleolus and Ribosomes in Organismal Growth and HomeostasisR35GM138340 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI Elif Sarinay Cenik · 2020 to 2026
$2.4M
Deutsche Forschungsgemeinschaft (German Research Foundation) CA 2753/1-1Deutsche Forschungsgemeinschaft (German Research Foundation) SFB 1064 (grant A28)Deutsche Forschungsgemeinschaft (German Research Foundation) SPP2202 (grant CA 2753/2-1)EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) grant agreement no. 852201Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) grant 5R35GM138340-03NIGMS NIH HHS R35 GM138340NIH HHS P40 OD010440Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation) Eccellenza Professorial Fellowship (PCEFP3_181204)
6 · The paper itself

Abstract

Chromatin architecture is a fundamental mediator of genome function. Fasting is a major environmental cue across the animal kingdom, yet how it impacts three-dimensional (3D) genome organization is unknown. Here we show that fasting induces an intestine-specific, reversible and large-scale spatial reorganization of chromatin in Caenorhabditis elegans. This fasting-induced 3D genome reorganization requires inhibition of the nutrient-sensing mTOR pathway, acting through the regulation of RNA Pol I, but not Pol II nor Pol III, and is accompanied by remodelling of the nucleolus. By uncoupling the 3D genome configuration from the animal's nutritional status, we find that the expression of metabolic and stress-related genes increases when the spatial reorganization of chromatin occurs, showing that the 3D genome might support the transcriptional response in fasted animals. Our work documents a large-scale chromatin reorganization triggered by fasting and reveals that mTOR and RNA Pol I shape genome architecture in response to nutrients.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsChromatinFastingRNA Polymerase ITOR Serine-Threonine KinasesAnimalsCell NucleolusChromatin Assembly and DisassemblySignal TransductionCaenorhabditis elegans ProteinsChromatinRNA Polymerase ITOR Serine-Threonine Kinases

Identifiers

PMID39300311
PMCPMC11567895

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.