Evidence map›Paper›PMID 39300211›Full record

ArticleThe EMBO journal2024

A shorter splicing isoform antagonizes ZBP1 to modulate cell death and inflammatory responses.

Masahiro Nagata, Yasmin Carvalho Schäfer, Laurens Wachsmuth, Manolis Pasparakis

Abstract read
In one paragraph

Article in The EMBO journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Review
  2. Mechanisms, regulation and clinical relevance of necroptosis.Nature reviews. Molecular cell biology · 2026
    Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Formation and biological implications of Z-DNA.Trends in genetics : TIG · 2026
    Review
  8. Review
  9. Research progress in PANoptosis mechanisms and their interplay with tuberculosis.Frontiers in cellular and infection microbiology · 2026
    Review
  10. Review
  11. Article
  12. Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Masahiro Nagata *Institute for Genetics, University of Cologne, D-50674, Cologne, Germany.
Yasmin Carvalho Schäfer *Institute for Genetics, University of Cologne, D-50674, Cologne, Germany.ORCID http://orcid.org/0009-0007-5978-8858
Laurens Wachsmuth *Institute for Genetics, University of Cologne, D-50674, Cologne, Germany.ORCID http://orcid.org/0000-0003-1701-9384
Manolis PasparakisInstitute for Genetics, University of Cologne, D-50674, Cologne, Germany. pasparakis@uni-koeln.de.ORCID http://orcid.org/0000-0002-9870-0966

Funding

Deutsche Forschungsgemeinschaft (DFG) 390661388Deutsche Forschungsgemeinschaft (DFG) 414786233EC | European Research Council (ERC) 787826
6 · The paper itself

Abstract

Z-DNA-binding protein 1 (ZBP1) is an interferon-inducible sensor of Z-DNA and Z-RNA, which has emerged as a critical regulator of cell death and inflammation. ZBP1 binds Z-DNA and Z-RNA via its Zα domains, and signals by engaging RIPK3 and RIPK1 via its RIP homotypic interaction motifs (RHIMs). Here, we show that mice express an alternatively-spliced shorter ZBP1 isoform (ZBP1-S), which harbours the Zα domains but lacks the RHIMs, and acts as an endogenous inhibitor of the full-length protein (ZBP1-L). Mice and cells expressing only ZBP1-S are resistant to ZBP1-mediated cell death and inflammation. In contrast, cells lacking ZBP1-S show increased ZBP1-L-induced death compared to cells expressing both isoforms. Moreover, loss of the short isoform accelerates and exacerbates skin inflammation induced by ZBP1-mediated necroptosis of RIPK1-deficient keratinocytes, revealing an important physiological role of ZBP1-S. Mechanistically, ZBP1-S suppresses ZBP1-L-mediated cell death by binding to Z-nucleic acids via its Zα domains. Therefore, ZBP1-S acts as an endogenous inhibitor that competes with full-length ZBP1-L for binding Z-nucleic acid ligands to fine-tune ZBP1-mediated cell death and inflammation.

Indexed as

Cell DeathInflammationProtein IsoformsReceptor-Interacting Protein Serine-Threonine KinasesRNA-Binding ProteinsAlternative SplicingAnimalsHumansKeratinocytesMiceMice, Inbred C57BLMice, KnockoutNecroptosisProtein IsoformsReceptor-Interacting Protein Serine-Threonine KinasesRipk1 protein, mouseRNA-Binding ProteinsZbp1 protein, mouseCell DeathInflammationNecroptosisZBP1

Identifiers

PMID39300211
PMCPMC11535224

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.