Evidence map›Paper›PMID 39300183›Full record

ArticleScientific reports2024

Treatment resistance to melanoma therapeutics on a single cell level.

Lijun Yao, Bradley A Krasnick, Ye Bi, Sunantha Sethuraman, Simon Goedegebuure, Amila Weerasinghe, Chris Wetzel, Qingsong Gao, Abimbola Oyedeji, Jacqueline Mudd and 4 more

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Lijun Yao *Department of Medicine, Washington University in St. Louis, St. Louis, MO, 63110, USA.
Bradley A Krasnick *Department of Surgery, Washington University School of Medicine, St. Louis, MO, USA.
Ye BiDepartment of Surgery, Washington University School of Medicine, St. Louis, MO, USA.
Sunantha SethuramanDepartment of Medicine, Washington University in St. Louis, St. Louis, MO, 63110, USA.
Simon GoedegebuureDepartment of Surgery, Washington University School of Medicine, St. Louis, MO, USA.
Amila WeerasingheDepartment of Medicine, Washington University in St. Louis, St. Louis, MO, 63110, USA.
Chris WetzelDepartment of Surgery, Washington University School of Medicine, St. Louis, MO, USA.
Qingsong GaoDepartment of Medicine, Washington University in St. Louis, St. Louis, MO, 63110, USA.
Abimbola OyedejiDepartment of Surgery, Washington University School of Medicine, St. Louis, MO, USA.
Jacqueline MuddDepartment of Surgery, Washington University School of Medicine, St. Louis, MO, USA.
Matthew A WyczalkowskiDepartment of Medicine, Washington University in St. Louis, St. Louis, MO, 63110, USA.
Michael WendlDepartment of Medicine, Washington University in St. Louis, St. Louis, MO, 63110, USA.
Li DingDepartment of Medicine, Washington University in St. Louis, St. Louis, MO, 63110, USA. lding@wustl.edu.
Ryan C FieldsDepartment of Surgery, Washington University School of Medicine, St. Louis, MO, USA. rcfields@wustl.edu.

Funding

Washington University PDX Development and Trial Center - Evaluation of Abemaciclib in Combination with Olaparib in Ovarian Cancer and Breast Cancer Patient-derived Xenograft ModelsU54CA224083 · NCI · WASHINGTON UNIVERSITY · PI Li Ding · 2017 to 2026
$13.0M
SURGICAL ONCOLOGY TRAINING GRANTT32CA009621 · NCI · WASHINGTON UNIVERSITY · PI TIMOTHY J. EBERLEIN, William E. Gillanders · 1988 to 2026
$12.9M
WASHINGTON UNIVERSITY HUMAN TUMOR ATLAS RESEARCH CENTERU2CCA233303 · NCI · WASHINGTON UNIVERSITY · PI DING, LI · 2018 to 2023
$9.7M
Advancing Precision Oncology in a Humanized, Fully Autologous Mouse ModelR01CA248277 · NCI · WASHINGTON UNIVERSITY · PI FIELDS, RYAN C, FLAVELL, RICHARD A · 2020 to 2024
$3.0M
Pathogenic Variant Discovery Across a Broad Spectrum of Human DiseasesR01HG009711 · NHGRI · WASHINGTON UNIVERSITY · PI CHEN, FENG, DING, LI · 2017 to 2020
$2.2M
Deep Discovery and Clinical Interpretation of Germline and Somatic Cancer DriversU24CA211006 · NCI · WASHINGTON UNIVERSITY · PI DING, LI, GOVINDAN, RAMASWAMY · 2016 to 2020
$1.8M
National Cancer Institute, USA T32CA009621National Cancer Institute, USA U2CCA233303NCI NIH HHS R01 CA248277NCI NIH HHS T32 CA009621NCI NIH HHS U24 CA211006NCI NIH HHS U2C CA233303NCI NIH HHS U54 CA224083NHGRI NIH HHS R01 HG009711
6 · The paper itself

Abstract

Therapy targeting the BRAF-MEK cascade created a treatment revolution for patients with BRAF mutant advanced melanoma. Unfortunately, 80% patients treated will progress by 5 years follow-up. Thus, it is imperative we study mechanisms of melanoma progression and therapeutic resistance. We created a scRNA (single cell RNA) atlas of 128,230 cells from 18 tumors across the treatment spectrum, discovering melanoma cells clustered strongly by transcriptome profiles of patients of origins. Our cell-level investigation revealed gains of 1q and 7q as likely early clonal events in metastatic melanomas. By comparing patient tumors and their derivative cell lines, we observed that PD1 responsive tumor fraction disappears when cells are propagated in vitro. We further established three anti-BRAF-MEK treatment resistant cell lines using three BRAF mutant tumors. ALDOA and PGK1 were found to be highly expressed in treatment resistant cell populations and metformin was effective in targeting the resistant cells. Our study suggests that the investigation of patient tumors and their derivative lines is essential for understanding disease progression, treatment response and resistance.

Indexed as

Drug Resistance, NeoplasmMelanomaProto-Oncogene Proteins B-rafSingle-Cell AnalysisCell Line, TumorGene Expression Regulation, NeoplasticHumansMetforminMutationPhosphoglycerate KinaseProgrammed Cell Death 1 ReceptorTranscriptomeBRAF protein, humanMetforminPDCD1 protein, humanPGK1 protein, humanPhosphoglycerate KinaseProgrammed Cell Death 1 ReceptorProto-Oncogene Proteins B-raf

Identifiers

PMID39300183
PMCPMC11413001

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.