Evidence map›Paper›PMID 39300140›Full record

ArticleNature communications2024

An elevated rate of whole-genome duplications in cancers from Black patients.

Leanne M Brown, Ryan A Hagenson, Tilen Koklič, Iztok Urbančič, Lu Qiao, Janez Strancar, Jason M Sheltzer

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Leanne M Brown *Yale University, School of Medicine, New Haven, CT, USA.ORCID 0009-0002-3940-4064
Ryan A Hagenson *Yale University, School of Medicine, New Haven, CT, USA.ORCID 0000-0001-9750-1925
Tilen KokličLaboratory of Biophysics, Condensed Matter Physics Department, Jožef Stefan Institute, Jamova Cesta 39, Ljubljana, Slovenia.
Iztok UrbančičLaboratory of Biophysics, Condensed Matter Physics Department, Jožef Stefan Institute, Jamova Cesta 39, Ljubljana, Slovenia.ORCID 0000-0003-3603-6585
Lu QiaoYale University, School of Medicine, New Haven, CT, USA.
Janez StrancarLaboratory of Biophysics, Condensed Matter Physics Department, Jožef Stefan Institute, Jamova Cesta 39, Ljubljana, Slovenia.ORCID 0000-0001-8032-132X
Jason M SheltzerYale University, School of Medicine, New Haven, CT, USA. jason.sheltzer@yale.edu.ORCID 0000-0003-1381-1323

Funding

Genomic and functional approaches to characterize Chr1q gains in cancerR01CA276666 · NCI · YALE UNIVERSITY · PI Jason Sheltzer, Ruping Sun · 2023 to 2026
$2.4M
Discovering the mechanisms-of-action of mistargeted anti-cancer agentsR01CA237652 · NCI · YALE UNIVERSITY · PI SHELTZER, JASON · 2020 to 2024
$1.6M
NCI NIH HHS R01 CA237652NCI NIH HHS R01 CA276666
6 · The paper itself

Abstract

In the United States, Black individuals have higher rates of cancer mortality than any other racial group. Here, we examine chromosome copy number changes in cancers from more than 1800 self-reported Black patients. We find that tumors from self-reported Black patients are significantly more likely to exhibit whole-genome duplications (WGDs), a genomic event that enhances metastasis and aggressive disease, compared to tumors from self-reported white patients. This increase in WGD frequency is observed across multiple cancer types, including breast, endometrial, and lung cancer, and is associated with shorter patient survival. We further demonstrate that combustion byproducts are capable of inducing WGDs in cell culture, and cancers from self-reported Black patients exhibit mutational signatures consistent with exposure to these carcinogens. In total, these findings identify a type of genomic alteration that is associated with environmental exposures and that may influence racial disparities in cancer outcomes.

Indexed as

Black or African AmericanGenome, HumanNeoplasmsDNA Copy Number VariationsFemaleHumansMaleMiddle AgedMutationUnited StatesWhite

Identifiers

PMID39300140
PMCPMC11413164

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.