ArticleScientific data2024
Whole genome sequences of 135 "Candidatus Liberibacter asiaticus" strains from China.
Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
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Who cites it
8 citing papers in PubMed.
- Control Targets in Plant-Pathogenic Bacteria: From Growth-Essential Processes to Anti-Virulence Strategies and Candidate Targets inPlants (Basel, Switzerland) · 2026Review
- Orthogroup-Based Comparative Analysis of Prophage Gene Content inInternational journal of molecular sciences · 2026Article
- Draft genome sequence CR-NGP1 strain of 'Candidatus Liberibacter asiaticus' (CLas) from the host Citrus reticulata (Nagpur mandarin) from Central India.World journal of microbiology & biotechnology · 2026Article
- PCR-based detection and phylogenetic analysis of Candidatus Liberibacter asiaticus in citrus orchards across Nepal.PloS one · 2026Article
- Genomic insights into the pathogenicity of a 'Candidatus Phytoplasma asteris' associated with Trema levigata witches' broom disease in China.BMC plant biology · 2025Article
- Genomics in plant pathogen identification and control.Frontiers in plant science · 2025Review
- Whole genome sequences of 135 "Candidatus Liberibacter asiaticus" strains from China.Scientific data · 2024Article
- Swords and shields: the war betweenFrontiers in plant science · 2024Review
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Authors and funding
6 authors.
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Abstract
"Candidatus Liberibacter asiaticus" (CLas) is a phloem-limited alpha-proteobacteria causing Citrus Huanglongbing, the destructive disease currently threatening global citrus industry. Genomic analyses of CLas provide insights into its evolution and biology. Here, we sequenced and assembled whole genomes of 135 CLas strains originally from 20 citrus cultivars collected at ten citrus-growing provinces in China. The resulting dataset comprised 135 CLas genomes ranging from 1,221,309 bp to 1,308,521 bp, with an average coverage of 675X. Prophage typing showed that 44 strains contained Type 1 prophage, 89 strains contained Type 2 prophage, 44 strains contained Type 3 prophage, and 34 of them contained more than one type of prophage/phage. The SNP calling identified a total of 5,090 SNPs. Genome-based phylogenetic analysis revealed two major clades among CLas strains, with Clade I dominated by CLas strains containing Type 1 prophage (79/95) and Clade II dominated by CLas strains containing Type 1 or Type 3 prophage (80/95). This CLas genome dataset provides valuable resources for studying genetic diversity and evolutionary pattern of CLas strains.
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