Evidence map›Paper›PMID 39300128›Full record

ArticleCommunications biology2024

Targeted protein degradation using chimeric human E2 ubiquitin-conjugating enzymes.

Jonathan D Taylor, Nathalie Barrett, Sergio Martinez Cuesta, Katelyn Cassidy, Fiona Pachl, James Dodgson, Radhika Patel, Tuula M Eriksson, Aidan Riley, Matthew Burrell and 7 more

Abstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Emerging biologic modalities for targeted protein degradation.The Journal of biological chemistry · 2026
    Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Jonathan D TaylorBiologics Engineering, R&D Oncology, AstraZeneca, Cambridge, CB2 0AA, UK. jonathan.taylor@astrazeneca.com.ORCID 0000-0002-9797-3989
Nathalie BarrettBiologics Engineering, R&D Oncology, AstraZeneca, Cambridge, CB2 0AA, UK.
Sergio Martinez CuestaData Sciences and Quantitative Biology, Discovery Sciences, R&D BioPharmaceuticals, AstraZeneca, Cambridge, CB2 0AA, UK.ORCID 0000-0001-9806-2805
Katelyn CassidyProtein Sciences, Discovery Sciences, R&D BioPharmaceuticals, AstraZeneca, Waltham, MA, 02451, USA.ORCID 0000-0002-4487-0011
Fiona PachlProtein Sciences, Discovery Sciences, R&D BioPharmaceuticals, AstraZeneca, Waltham, MA, 02451, USA.
James DodgsonBiologics Engineering, R&D Oncology, AstraZeneca, Cambridge, CB2 0AA, UK.
Radhika PatelCentre for Genomics Research, Dynamic Omics, Discovery Sciences, R&D BioPharmaceuticals, AstraZeneca, Cambridge, CB2 0AA, UK.
Tuula M ErikssonBiologics Engineering, R&D Oncology, AstraZeneca, Cambridge, CB2 0AA, UK.
Aidan RileyBiologics Engineering, R&D Oncology, AstraZeneca, Cambridge, CB2 0AA, UK.
Matthew BurrellBiologics Engineering, R&D Oncology, AstraZeneca, Cambridge, CB2 0AA, UK.
Christin BauerBiologics Engineering, R&D Oncology, AstraZeneca, Cambridge, CB2 0AA, UK.ORCID 0000-0003-3466-7076
D Gareth ReesBiologics Engineering, R&D Oncology, AstraZeneca, Cambridge, CB2 0AA, UK.ORCID 0000-0002-4268-6018
Raffaello CimbroCentre for Genomics Research, Dynamic Omics, Discovery Sciences, R&D BioPharmaceuticals, AstraZeneca, Cambridge, CB2 0AA, UK.
Andrew X ZhangProtein Sciences, Discovery Sciences, R&D BioPharmaceuticals, AstraZeneca, Waltham, MA, 02451, USA.
Ralph R MinterBiologics Engineering, R&D Oncology, AstraZeneca, Cambridge, CB2 0AA, UK.
James HuntBiologics Engineering, R&D Oncology, AstraZeneca, Cambridge, CB2 0AA, UK. james.hunt1@astrazeneca.com.ORCID 0000-0002-3144-3467
Sandrine LeggBiologics Engineering, R&D Oncology, AstraZeneca, Cambridge, CB2 0AA, UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Proteins can be targeted for degradation by engineering biomolecules that direct them to the eukaryotic ubiquitination machinery. For instance, the fusion of an E3 ubiquitin ligase to a suitable target binding domain creates a 'biological Proteolysis-Targeting Chimera' (bioPROTAC). Here we employ an analogous approach where the target protein is recruited directly to a human E2 ubiquitin-conjugating enzyme via an attached target binding domain. Through rational design and screening we develop E2 bioPROTACs that induce the degradation of the human intracellular proteins SHP2 and KRAS. Using global proteomics, we characterise the target-specific and wider effects of E2 vs. VHL-based fusions. Taking SHP2 as a model target, we also employ a route to bioPROTAC discovery based on protein display libraries, yielding a degrader with comparatively weak affinity capable of suppressing SHP2-mediated signalling.

Indexed as

Protein Tyrosine Phosphatase, Non-Receptor Type 11ProteolysisUbiquitin-Conjugating EnzymesHEK293 CellsHumansProtein BindingProteomicsProto-Oncogene Proteins p21(ras)Recombinant Fusion ProteinsUbiquitinationKRAS protein, humanProtein Tyrosine Phosphatase, Non-Receptor Type 11Proto-Oncogene Proteins p21(ras)PTPN11 protein, humanRecombinant Fusion ProteinsUbiquitin-Conjugating Enzymes

Identifiers

PMID39300128
PMCPMC11415077

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.