Evidence map›Paper›PMID 39300082›Full record

ArticleNature communications2024

Activation of parkin by a molecular glue.

Véronique Sauvé, Eric Stefan, Nathalie Croteau, Thomas Goiran, Rayan Fakih, Nupur Bansal, Adelajda Hadzipasic, Jing Fang, Paramasivam Murugan, Shimin Chen and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Review
  2. Review
  3. Species-dependent activities of the PINK1-parkin axis.Translational neurodegeneration · 2026
    Review
  4. Review
  5. Review
  6. Review
  7. Article
  8. Review
  9. Review
  10. Phospho-ubiquitin: rewriting the ubiquitin code.Molecular neurodegeneration · 2026
    Review
  11. Neural cell state modulation bybioRxiv : the preprint server for biology · 2026
    Article
  12. Function and regulation of the mitochondrial stress response.Nature structural & molecular biology · 2026
    Review
  13. Review
  14. Review
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Véronique SauvéDepartment of Biochemistry, McGill University, Montreal, QC, Canada.ORCID 0000-0002-5981-4573
Eric StefanBiotherapeutics and Medicinal Sciences, Biogen, Cambridge, MA, USA.
Nathalie CroteauCentre de Recherche en Biologie Structurale, McGill University, Montreal, QC, Canada.
Thomas GoiranMcGill Parkinson Program, Montreal Neurological Institute, McGill University, Montreal, QC, Canada.
Rayan FakihDepartment of Biochemistry, McGill University, Montreal, QC, Canada.
Nupur BansalBiotherapeutics and Medicinal Sciences, Biogen, Cambridge, MA, USA.
Adelajda HadzipasicBiotherapeutics and Medicinal Sciences, Biogen, Cambridge, MA, USA.
Jing FangBiotherapeutics and Medicinal Sciences, Biogen, Cambridge, MA, USA.
Paramasivam MuruganBiotherapeutics and Medicinal Sciences, Biogen, Cambridge, MA, USA.
Shimin ChenBiotherapeutics and Medicinal Sciences, Biogen, Cambridge, MA, USA.
Edward A FonStructural Genomics Consortium, McGill University, Montreal, QC, Canada.ORCID 0000-0002-5520-6239
Warren D HirstNeurodegenerative Disease Research Unit, Biogen, Cambridge, MA, USA.
Laura F SilvianBiotherapeutics and Medicinal Sciences, Biogen, Cambridge, MA, USA. laura.silvian@biogen.com.ORCID 0000-0002-5299-5201
Jean-François TrempeCentre de Recherche en Biologie Structurale, McGill University, Montreal, QC, Canada.ORCID 0000-0002-6543-3371
Kalle GehringDepartment of Biochemistry, McGill University, Montreal, QC, Canada. kalle.gehring@mcgill.ca.ORCID 0000-0001-6500-1184

Funding

Gouvernement du Canada | Canadian Institutes of Health Research (Instituts de Recherche en Santé du Canada) FDN-154301Gouvernement du Canada | Canadian Institutes of Health Research (Instituts de Recherche en Santé du Canada) FDN-159903Gouvernement du Canada | Canadian Institutes of Health Research (Instituts de Recherche en Santé du Canada) PJT-186189Michael J. Fox Foundation for Parkinson's Research (Michael J. Fox Foundation) MJFF-019029
6 · The paper itself

Abstract

Mutations in parkin and PINK1 cause early-onset Parkinson's disease (EOPD). The ubiquitin ligase parkin is recruited to damaged mitochondria and activated by PINK1, a kinase that phosphorylates ubiquitin and the ubiquitin-like domain of parkin. Activated phospho-parkin then ubiquitinates mitochondrial proteins to target the damaged organelle for degradation. Here, we present the mechanism of activation of a new class of small molecule allosteric modulators that enhance parkin activity. The compounds act as molecular glues to enhance the ability of phospho-ubiquitin (pUb) to activate parkin. Ubiquitination assays and isothermal titration calorimetry with the most active compound (BIO-2007817) identify the mechanism of action. We present the crystal structure of a closely related compound (BIO-1975900) bound to a complex of parkin and two pUb molecules. The compound binds next to pUb on RING0 and contacts both proteins. Hydrogen-deuterium exchange mass spectrometry (HDX-MS) experiments confirm that activation occurs through release of the catalytic Rcat domain. In organello and mitophagy assays demonstrate that BIO-2007817 partially rescues the activity of parkin EOPD mutants, R42P and V56E, offering a basis for the design of activators as therapeutics for Parkinson's disease.

Indexed as

Parkinson DiseaseUbiquitinationUbiquitin-Protein LigasesAllosteric RegulationCrystallography, X-RayHEK293 CellsHumansMitophagyModels, MolecularMutationPhosphorylationProtein BindingProtein KinasesPTEN-Induced Putative KinaseUbiquitinparkin proteinProtein KinasesPTEN-Induced Putative KinaseUbiquitinUbiquitin-Protein Ligases

Identifiers

PMID39300082
PMCPMC11412986

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.