Evidence map›Paper›PMID 39295614›Full record

ArticleTurkish journal of medical sciences2024

Correlation between plasma ccfDNA, mtDNA changes, CTCs, and epithelial-mesenchymal transition in breast cancer patients undergoing NACT.

Betül Çelik, İrem Peker Eyüboğlu, Sinan Koca, M Ümit Uğurlu, Özkan Alan, Gökçe Güllü Amuran, Tuğba Akin Telli, Fulden Yumuk, Mustafa Akkiprik

Abstract read
In one paragraph

Article in Turkish journal of medical sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
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  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Betül ÇelikDepartment of Medical Biology and Genetics, Health Sciences Institute, Marmara University, İstanbul, Turkiye.ORCID https://orcid.org/0000-0002-4093-1892
İrem Peker EyüboğluDepartment of Medical Biology, School of Medicine, Marmara University, İstanbul, Turkiye.ORCID https://orcid.org/0000-0003-0764-9841
Sinan KocaDepartment of Medical Oncology, Ümraniye Education Research Hospital, İstanbul, Turkiye.ORCID https://orcid.org/0000-0002-8370-1587
M Ümit UğurluDepartment of General Surgery, School of Medicine, Marmara University, İstanbul, Turkiye.ORCID https://orcid.org/0000-0002-4757-5560
Özkan AlanDepartment of Medical Oncology, School of Medicine, Marmara University, İstanbul, Turkiye.ORCID https://orcid.org/0000-0002-6635-2012
Gökçe Güllü AmuranDepartment of Medical Biology, School of Medicine, Marmara University, İstanbul, Turkiye.ORCID https://orcid.org/0000-0002-2267-2110
Tuğba Akin TelliDepartment of Medical Oncology, School of Medicine, Marmara University, İstanbul, Turkiye.ORCID https://orcid.org/0000-0001-6535-6030
Fulden YumukDepartment of Medical Oncology, School of Medicine, Marmara University, İstanbul, Turkiye.ORCID https://orcid.org/0000-0001-8650-299X
Mustafa AkkiprikDepartment of Medical Biology, School of Medicine, Marmara University, İstanbul, Turkiye.ORCID https://orcid.org/0000-0002-1100-765X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background/aim: Breast cancer is the most prevalent cancer in women, emphasizing need for noninvasive blood biomarkers to aid in treatment selection. Previous studies have demonstrated elevated levels of plasma circulating cell-free DNA (ccfDNA) in breast cancer patients. Both ccfDNA and mitochondrial DNA (mtDNA) are fragments released into the bloodstream. In this study, we investigated effectiveness of ccfDNA and mtDNA as indicators of treatment response and explored their potential as monitoring biomarkers. Additionally, we compared these markers with circulating tumor cell (CTC) data and assessed their relationship with epithelial-mesenchymal transition (EMT). Materials and methods: Thirty-six female breast cancer patients and 21 healthy females were included in the study. Quantitative polymerase chain reaction (qPCR) was performed on plasma samples to measure levels of ND1, ND4, ALU115, ALU247, and GAPDH, and DNA integrity was determined by calculating ratios of ALU247/ALU115 and ND4/ND1. Results: After treatment, patients had a significant decrease in ccfDNA levels and a significant increase in mtDNA copy number (mtDNAcn). However, there was no significant change in ccfDNA and mtDNA integrity. When comparing all groups, patients exhibited higher levels of ALU115 and ALU247 compared to controls. Moreover, patients demonstrated significantly lower ccfDNA integrity than controls. Conclusion: This study represents the first comprehensive investigation of plasma ccfDNA levels, mtDNAcn, and integrities collectively. Furthermore, it is the first study to explore the relationship between these markers and CTCs, cancer stem cell markers, treatment response, and metastatic status. Our findings suggest that plasma ccfDNA and mtDNA may serve as potential biomarkers for assessing chemotherapy response and can be employed alone or in combination with other biomarkers to monitor treatment efficacy in breast cancer patients.

Indexed as

Biomarkers, TumorBreast NeoplasmsCell-Free Nucleic AcidsDNA, MitochondrialEpithelial-Mesenchymal TransitionNeoplastic Cells, CirculatingAdultAgedFemaleHumansMiddle AgedNeoadjuvant TherapyBiomarkers, TumorCell-Free Nucleic AcidsDNA, MitochondrialBreast cancerccfDNAEMTmtDNAneoadjuvant therapy

Identifiers

PMID39295614
PMCPMC11407343

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.