Evidence map›Paper›PMID 39294482›Full record

ArticleWorld journal of microbiology & biotechnology2024

An efficient approach for overproduction of DNA polymerase from Pyrococcus furiosus using an optimized autoinduction system in Escherichia coli.

Moch Irfan Hadi, Fina Amreta Laksmi, Helbert, Arfena Rizqi Amalia, Azriel Dafa Muhammad, Wiga Alif Violando

Abstract read
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In one paragraph

Article in World journal of microbiology & biotechnology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Moch Irfan HadiFaculty of Science and Technology, UIN Sunan Ampel, Surabaya, Indonesia.ORCID http://orcid.org/0000-0001-8725-4836
Fina Amreta LaksmiResearch Center for Applied Microbiology, National Research and Innovation Agency, Jalan Raya Bogor KM 46, Cibinong, Bogor, 16911, West Java, Indonesia. fina003@brin.go.id.ORCID http://orcid.org/0000-0001-6887-2276
HelbertResearch Center for Ecology and Ethnobiology, National Research and Innovation Agency, Jalan Raya Bogor KM 46, Cibinong, Bogor, 16911, West Java, Indonesia.ORCID http://orcid.org/0000-0002-1281-2159
Arfena Rizqi AmaliaResearch Center for Applied Microbiology, National Research and Innovation Agency, Jalan Raya Bogor KM 46, Cibinong, Bogor, 16911, West Java, Indonesia.
Azriel Dafa MuhammadResearch Center for Applied Microbiology, National Research and Innovation Agency, Jalan Raya Bogor KM 46, Cibinong, Bogor, 16911, West Java, Indonesia.
Wiga Alif ViolandoFaculty of Science and Technology, UIN Sunan Ampel, Surabaya, Indonesia.ORCID http://orcid.org/0000-0002-1642-1307

Funding

Ministry of religious affair Republic of Indonesia under applied research grant correlates business and industry (DUDI) Grant No: 5377 fiscal year 2023
6 · The paper itself

Abstract

High fidelity DNA polymerase from Pyrococcus furiosus (Pfupol) is an attractive alternative to the highly popular DNA polymerase from Thermus aquaticus. Because this enzyme is in great demand for biotechnological applications, optimizing Pfupol production is essential to supplying the industry's expanding demand. T7-induced promoter expression in Escherichia coli expression systems is used to express recombinant Pfupol; however, this method is not cost-effective. Here, we have effectively developed an optimized process for the autoinduction approach of Pfupol expression in a defined medium. To better examine Pfupol's activities, its purified fraction was used. A 71 mg/L of pure Pfupol was effectively produced, resulting in a 2.6-fold increase in protein yield when glucose, glycerol, and lactose were added in a defined medium at concentrations of 0.05%, 1%, and 0.6%, respectively, and the condition for production in a 5 L bioreactor was as follow: 200 rpm, 3 vvm, and 10% inoculant. Furthermore, the protein exhibited 1445 U/mg of specific activity when synthesized in its active state. This work presents a high level of Pfupol production, which makes it an economically viable and practically useful approach.

Indexed as

BioreactorsCulture MediaDNA-Directed DNA PolymeraseEscherichia coliPyrococcus furiosusRecombinant ProteinsGlucoseGlycerolLactosePromoter Regions, GeneticCulture MediaDNA-Directed DNA PolymeraseGlucoseGlycerolLactoseRecombinant ProteinsAutoinductionChemically defined mediumDNA polymeraseEscherichia coliPyrococcus furiosus

Identifiers

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.