Evidence map›Paper›PMID 39293939›Full record

ArticleThe Journal of neuroscience : the official journal of the Society for Neuroscience2024

A Perspective on Neuroscience Data Standardization with Neurodata Without Borders.

Andrea Pierré, Tuan Pham, Jonah Pearl, Sandeep Robert Datta, Jason T Ritt, Alexander Fleischmann

Abstract read
In one paragraph

Article in The Journal of neuroscience : the official journal of the Society for Neuroscience, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Andrea PierréDepartment of Neuroscience, Division of Biology and Medicine, Brown University, Providence, Rhode Island 02912.ORCID 0000-0003-4501-5428
Tuan PhamDepartment of Neuroscience, Division of Biology and Medicine, Brown University, Providence, Rhode Island 02912.
Jonah PearlDepartment of Neurobiology, Harvard Medical School, Boston, Massachusetts 02115.ORCID 0000-0001-9300-1552
Sandeep Robert DattaDepartment of Neurobiology, Harvard Medical School, Boston, Massachusetts 02115.ORCID 0000-0002-8068-3862
Jason T RittThe Robert J. and Nancy D. Carney Institute for Brain Science, Brown University, Providence, Rhode Island 02912 jason_ritt@brown.edu alexander_fleischmann@brown.edu.ORCID 0000-0003-3113-7977
Alexander FleischmannDepartment of Neuroscience, Division of Biology and Medicine, Brown University, Providence, Rhode Island 02912 jason_ritt@brown.edu alexander_fleischmann@brown.edu.

Funding

The Structure of Olfactory Neural and Perceptual SpacesU19NS112953 · NINDS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI RINBERG, DMITRY · 2019 to 2023
$18.4M
Genetic Analysis and Manipulation Core (GAEC)P50HD105351 · NICHD · BOSTON CHILDREN'S HOSPITAL · PI SCOTT Loren POMEROY, MUSTAFA SAHIN · 2021 to 2026
$9.4M
Odor Memory Traces in the Mouse Olfactory Cortex - SupplementR01DC017437 · NIDCD · BROWN UNIVERSITY · PI FLEISCHMANN, ALEXANDER · 2019 to 2023
$2.3M
Brain Science Compute ClusterS10OD025181 · OD · BROWN UNIVERSITY · PI SANES, JEROME N · 2019 to 2019
$600k
NICHD NIH HHS P50 HD105351NIDCD NIH HHS R01 DC017437NIH HHS S10 OD025181NINDS NIH HHS U19 NS112953
6 · The paper itself

Abstract

Neuroscience research has evolved to generate increasingly large and complex experimental data sets, and advanced data science tools are taking on central roles in neuroscience research. Neurodata Without Borders (NWB), a standard language for neurophysiology data, has recently emerged as a powerful solution for data management, analysis, and sharing. We here discuss our labs' efforts to implement NWB data science pipelines. We describe general principles and specific use cases that illustrate successes, challenges, and non-trivial decisions in software engineering. We hope that our experience can provide guidance for the neuroscience community and help bridge the gap between experimental neuroscience and data science. Key takeaways from this article are that (1) standardization with NWB requires non-trivial design choices; (2) the general practice of standardization in the lab promotes data awareness and literacy, and improves transparency, rigor, and reproducibility in our science; (3) we offer several feature suggestions to ease the extensibility, publishing/sharing, and usability for NWB standard and users of NWB data.

Indexed as

NeurosciencesAnimalsData ScienceHumansInformation DisseminationSoftwarebig data neurosciencecollaborative sciencedata science pipelinesdata standardization with neurodata without borders

Identifiers

PMID39293939
PMCPMC11411583

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.