Evidence map›Paper›PMID 39292776›Full record

ArticleScience advances2024

Intein splicing efficiency and RadA levels can control the mode of archaeal DNA replication.

Geraldy L S Liman, Christopher W Lennon, Jaylin L Mandley, Alina M Galyon, Kelly M Zatopek, Andrew F Gardner, Thomas J Santangelo

Abstract read
In one paragraph

Article in Science advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Geraldy L S LimanDepartment of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, CO, USA.ORCID 0009-0001-4053-6008
Christopher W LennonDepartment of Biological Sciences, Murray State University, Murray, KY, USA.ORCID 0000-0001-9413-180X
Jaylin L MandleyDepartment of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, CO, USA.ORCID 0009-0000-8930-4702
Alina M GalyonDepartment of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, CO, USA.ORCID 0009-0004-3228-4121
Kelly M ZatopekNew England Biolabs Inc., Ipswich, MA, USA.ORCID 0000-0002-0787-8495
Andrew F GardnerNew England Biolabs Inc., Ipswich, MA, USA.ORCID 0000-0002-9690-632X
Thomas J SantangeloDepartment of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, CO, USA.ORCID 0000-0003-4559-3244

Funding

Regulation of Archaeal TranscriptionR35GM143963 · NIGMS · COLORADO STATE UNIVERSITY · PI Thomas James Santangelo · 2022 to 2026
$1.8M
Inteins: Expanding Biological Roles and Biotechnological ApplicationsR15GM143662 · NIGMS · MURRAY STATE UNIVERSITY · PI LENNON, CHRISTOPHER WILLIAM · 2021 to 2025
$811k
NIGMS NIH HHS R15 GM143662NIGMS NIH HHS R35 GM143963
6 · The paper itself

Abstract

Inteins (intervening proteins), mobile genetic elements removed through protein splicing, often interrupt proteins required for DNA replication, recombination, and repair. An abundance of in vitro evidence implies that inteins may act as regulatory elements, whereby reduced splicing inhibits production of the mature protein lacking the intein, but in vivo evidence of regulatory intein excision in the native host is absent. The model archaeon

Indexed as

Archaeal ProteinsDNA-Binding ProteinsDNA ReplicationInteinsThermococcusDNA, ArchaealDNA DamageProtein SplicingRecombination, GeneticArchaeal ProteinsDNA, ArchaealDNA-Binding ProteinsRadA protein, archaeal

Identifiers

PMID39292776
PMCPMC11409957

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.