Evidence map›Paper›PMID 39292021›Full record

ArticleRevista da Sociedade Brasileira de Medicina Tropical2024

The performance of Xpert MTB/RIF and MTBDRplus within a Programmatic setting at TB Laboratory in Rio de Janeiro, Brazil.

Thiago da Silva Santos Malaquias, Eunice Petris Ribeiro, Tatiana Cristina Pereira Dutra, Marina Ricardo, Richard Salvato, Marcela Bhering, Daniella Castanheira Bartholomeu, Elis Regina Dalla-Costa, Miguel Viveiros, Elisangela Costa da Silva and 1 more

Abstract read
In one paragraph

Article in Revista da Sociedade Brasileira de Medicina Tropical, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Thiago da Silva Santos MalaquiasUniversidade Federal do Rio de Janeiro, Faculdade de Medicina, Programa Acadêmico de Tuberculose, Rio de Janeiro, RJ, Brasil.ORCID http://orcid.org/0000-0001-8783-8962
Eunice Petris RibeiroUniversidade Federal do Rio de Janeiro, Faculdade de Medicina, Programa Acadêmico de Tuberculose, Rio de Janeiro, RJ, Brasil.ORCID http://orcid.org/0009-0003-4835-1571
Tatiana Cristina Pereira DutraUniversidade Federal do Rio de Janeiro, Faculdade de Medicina, Programa Acadêmico de Tuberculose, Rio de Janeiro, RJ, Brasil.ORCID http://orcid.org/0000-0002-7262-9989
Marina RicardoUniversidade Federal do Rio de Janeiro, Faculdade de Medicina, Programa Acadêmico de Tuberculose, Rio de Janeiro, RJ, Brasil.ORCID http://orcid.org/0000-0002-6050-541X
Richard SalvatoSecretaria Estadual da Saúde do Rio Grande do Sul, Centro de Desenvolvimento Científico e Tecnológico, Porto Alegre, RS, Brasil.ORCID http://orcid.org/0000-0002-5701-9437
Marcela BheringUniversidade Federal do Rio de Janeiro, Faculdade de Medicina, Programa Acadêmico de Tuberculose, Rio de Janeiro, RJ, Brasil.ORCID http://orcid.org/0000-0002-1568-026X
Daniella Castanheira BartholomeuUniversidade Federal de Minas Gerais, Instituto de Ciências Biológica, Departamento de Parasitologia, Belo Horizonte, MG, Brasil.ORCID http://orcid.org/0000-0003-0974-7357
Elis Regina Dalla-CostaUniversidade Federal do Rio de Janeiro, Faculdade de Medicina, Programa Acadêmico de Tuberculose, Rio de Janeiro, RJ, Brasil.ORCID http://orcid.org/0000-0003-2862-8724
Miguel ViveirosUniversidade Nova de Lisboa, Instituto de Higiene e Medicina Tropical, Lisboa, Portugal.ORCID http://orcid.org/0000-0001-9676-6251
Elisangela Costa da SilvaUniversidade Federal do Rio de Janeiro, Faculdade de Medicina, Programa Acadêmico de Tuberculose, Rio de Janeiro, RJ, Brasil.ORCID http://orcid.org/0000-0001-9833-1825
Afrânio KritskiUniversidade Federal do Rio de Janeiro, Faculdade de Medicina, Programa Acadêmico de Tuberculose, Rio de Janeiro, RJ, Brasil.ORCID http://orcid.org/0000-0002-5900-6007

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundFew studies in routine settings have confirmed the high accuracy of the Xpert MTB/RIF assay for detecting rifampicin resistance (RR) and the first-line probe assay (FL-LPA) for detecting both RR and isoniazid resistance (INHR).

methodsThe performance of Xpert MTB/RIF and MTBDRplus VER 2.0 LPA was evaluated in 180 Mycobacterium tuberculosis samples collected from January 2018 to December 2019 in Rio de Janeiro, Brazil. The results were compared with those from BACTEC MGIT 960 culture and drug susceptibility testing (DST). Whole-genome sequencing was performed on the samples with discordant results.

resultsThe Xpert MTB/RIF assay showed a sensitivity (Se) of 93.3% and a specificity (Sp) of 97.6%, detecting RR. The performance of FL-LPA to identify RIF and INH resistance was, respectively, (Se) 100% and 83.3% and (Sp) 98.8% and 100%. Among 18 clinical isolates with INHR detected by FL-LPA, mutations in the katG gene were observed in 100% of samples, of which only two (11.1%) had mutations in both katG and inhA genes. Overall, the discordant results were identified in 9 (5%) samples. Among the four Xpert RIF-resistant and DST-sensitive, two harbored mutations in rpoB Leu430Pro. Among the four FL-LPA-sensitive and DST-resistant, one had a mutation in inhA 17G>T. FL-LPA showed high accuracy in detecting RR and INHR.

conclusionsThe MTBDRplus test demonstrated excellent performance in detecting RR, and INHR in clinical isolates under routine conditions at a reference laboratory in Rio de Janeiro, Brazil. Incorporating both tests can improve drug-resistant tuberculosis treatment outcomes and monitor the INHR incidence.

Indexed as

IsoniazidMicrobial Sensitivity TestsMycobacterium tuberculosisRifampinSensitivity and SpecificityTuberculosis, Multidrug-ResistantAntibiotics, AntitubercularAntitubercular AgentsBrazilHumansMutationWhole Genome SequencingAntibiotics, AntitubercularAntitubercular AgentsIsoniazidRifampin

Identifiers

PMID39292021
PMCPMC11419677

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.