Evidence map›Paper›PMID 39290577›Full record

ArticleBioinformatics and biology insights2024

Emergence of SARS-CoV-2 Variants Are Induced by Coinfections With Dengue.

Hassan M Al-Emran, Fazlur Rahman, Laxmi Sarkar, Prosanto Kumar Das, Provakar Mondol, Suriya Yesmin, Pipasha Sultana, Toukir Ahammed, Rasel Parvez, Md Shazid Hasan and 12 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Bioinformatics and biology insights, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Decoding the cross-immune pressure: Dengue's role in SARS-CoV-2 evolution.Computational and structural biotechnology journal · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Hassan M Al-EmranDepartment of Biomedical Engineering, Jashore University of Science and Technology, Jashore, Bangladesh.ORCID https://orcid.org/0000-0003-1185-6720
Fazlur RahmanDepartment of Accounting and Information Systems, Jashore University of Science and Technology, Jashore, Bangladesh.
Laxmi SarkarDepartment of Microbiology, Jashore University of Science and Technology, Jashore, Bangladesh.
Prosanto Kumar DasDepartment of Microbiology, Jashore University of Science and Technology, Jashore, Bangladesh.
Provakar MondolDepartment of Microbiology, Jashore University of Science and Technology, Jashore, Bangladesh.
Suriya YesminDepartment of Microbiology, Jashore University of Science and Technology, Jashore, Bangladesh.
Pipasha SultanaDepartment of Microbiology, Jashore University of Science and Technology, Jashore, Bangladesh.
Toukir AhammedDepartment of Microbiology, Jashore University of Science and Technology, Jashore, Bangladesh.
Rasel ParvezDepartment of Microbiology, Jashore University of Science and Technology, Jashore, Bangladesh.
Md Shazid HasanDepartment of Microbiology, Jashore University of Science and Technology, Jashore, Bangladesh.
Shovon Lal SarkarDepartment of Microbiology, Jashore University of Science and Technology, Jashore, Bangladesh.
M Shaminur RahmanDepartment of Microbiology, Jashore University of Science and Technology, Jashore, Bangladesh.
Anamica HossainDepartment of Microbiology, Dhaka University, Dhaka, Bangladesh.
Mahmudur RahmanAbhaynagar Upazila Health Complex, Jashore, Bangladesh.
Ovinu Kibria IslamDepartment of Microbiology, Jashore University of Science and Technology, Jashore, Bangladesh.
Md Tanvir IslamDepartment of Microbiology, Jashore University of Science and Technology, Jashore, Bangladesh.
Shireen NigarDepartment of Nutrition and Food Technology, Jashore University of Science and Technology, Jashore, Bangladesh.
Selina AkterDepartment of Microbiology, Jashore University of Science and Technology, Jashore, Bangladesh.
A S M Rubayet Ul AlamDepartment of Microbiology, Jashore University of Science and Technology, Jashore, Bangladesh.
Mohammad Mahfuzur RahmanDepartment of Climate and Disaster Management, Jashore University of Science and Technology, Jashore, Bangladesh.
Iqbal Kabir JahidDepartment of Microbiology, Jashore University of Science and Technology, Jashore, Bangladesh.
M Anwar HossainGenome Centre, Jashore University of Science and Technology, Jashore, Bangladesh.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) that emerged in late 2019 has accumulated a series of point mutations and evolved into several variants of concern (VOCs), some of which are more transmissible and potentially more severe than the original strain. The most notable VOCs are Alpha, Beta, Gamma, Delta, and Omicron, which have spread to various parts of the world. This study conducted surveillance in Jashore, Bangladesh to identify the prevalence of SARS-CoV-2 coinfected with dengue virus and their genomic effect on the emergence of VOCs. A hospital-based COVID-19 surveillance from June to August, 2021 identified 9 453 positive patients in the surveillance area. The study enrolled 572 randomly selected COVID-19-positive patients, of which 11 (2%) had dengue viral coinfection. Whole genome sequences of SARS-CoV-2 were analyzed and compared between coinfection positive and negative group. In addition, we extracted 185 genome sequences from GISAID to investigate the cross-correlation function between SARS-CoV-2 mutations and VOC; multiple ARIMAX(p,d,q) models were developed to estimate the average number of amino acid (aa) substitution among different SARS-CoV-2 VOCs. The results of the study showed that the coinfection group had an average of 30.6 (±1.7) aa substitutions in SARS-CoV-2, whereas the dengue-negative COVID-19 group had that average of 25.6 (±1.8;

Indexed as

ARIMAX modelcoinfectiondenguegenome sequenceSARS-CoV-2variants of concern

Identifiers

PMID39290577
PMCPMC11406487

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.